8DTI | pdb_00008dti

Cryo-EM structure of Arabidopsis SPY in complex with GDP-fucose

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	F_UNCLASSIFIED	e8dtiB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: F_UNCLASSIFIED	ECOD (1.6)
B	F_UNCLASSIFIED	e8dtiB3	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: F_UNCLASSIFIED	ECOD (1.6)
A	F_UNCLASSIFIED	e8dtiA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: F_UNCLASSIFIED	ECOD (1.6)
A	F_UNCLASSIFIED	e8dtiA3	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF13844	Glycosyl transferase family 41 (Glyco_transf_41)	Glycosyl transferase family 41	-	Family
A, B	PF00515	Tetratricopeptide repeat (TPR_1)	Tetratricopeptide repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY	UDP-glycosyltransferase activity catalytic activity, acting on a protein glycosyltransferase activity protein O-acetylglucosaminyltransferase activity acetylglucosaminyltransferase activity transferase activity hexosyltransferase activity catalytic activity protein N-acetylglucosaminyltransferase activity fucosyltransferase activity peptide-O-fucosyltransferase activity	developmental process cellular developmental process cell differentiation cellular process cellular response to stimulus cellular response to gibberellin stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication response to gibberellin cellular response to endogenous stimulus developmental process cellular developmental process cell differentiation cellular process cellular response to stimulus cellular response to gibberellin stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication response to gibberellin cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus gibberellin mediated signaling pathway regulation of biological process response to endogenous stimulus gibberellic acid mediated signaling pathway biological regulation response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical cellular response to lipid rhythmic process multicellular organismal process reproductive system development reproductive process flower development developmental process involved in reproduction reproductive shoot system development multicellular organism development anatomical structure development reproductive structure development shoot system development post-embryonic development system development cellular response to cytokinin stimulus cytokinin-activated signaling pathway response to cytokinin reactive oxygen species metabolic process metabolic process regulation of metabolic process regulation of reactive oxygen species metabolic process negative regulation of signaling negative regulation of biological process regulation of signal transduction negative regulation of cell communication negative regulation of cellular process regulation of signaling negative regulation of response to stimulus negative regulation of gibberellic acid mediated signaling pathway regulation of gibberellic acid mediated signaling pathway negative regulation of signal transduction regulation of response to stimulus regulation of cell communication carbohydrate derivative biosynthetic process protein O-linked glycosylation via fucose glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process macromolecule biosynthetic process biosynthetic process protein O-linked glycosylation protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B	IPR006597	Sel1-like repeat	Repeat
A, B	IPR019734	Tetratricopeptide repeat	Repeat
A, B	IPR051939	Glycosyltransferase 41/O-GlcNAc transferase	Family
A, B	IPR029489	O-GlcNAc transferase, C-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.