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 8DTB | pdb_00008dtb

Focus/local refined map in C1 of signal subtracted RyR1 particles in complex with ImperaCalcin

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth B]SCOP2B Superfamilyomega toxin-like 8044554 3000255 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
E [auth J]Ferritine8dtbJ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: FerritinECOD (v295.2)
DFerritine8dtbD1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: FerritinECOD (v295.2)
C [auth A]Ferritine8dtbA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: FerritinECOD (v295.2)
B [auth G]Ferritine8dtbG1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: FerritinECOD (v295.2)
A [auth B]Polyketide_cyc2e8dtbB1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Polyketide_cyc2ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth G],
C [auth A],
D,
E [auth J]		Ryanodine receptor 1
A [auth B]Imperacalcin -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth G],
C [auth A],
D,
E [auth J]		IPR036300Mir domain superfamilyHomologous Superfamily
B [auth G],
C [auth A],
D,
E [auth J]		IPR000699RIH domainDomain
B [auth G],
C [auth A],
D,
E [auth J]		IPR013662RyR/IP3R Homology associated domainDomain
B [auth G],
C [auth A],
D,
E [auth J]		IPR016093MIR motifDomain
B [auth G],
C [auth A],
D,
E [auth J]		IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
B [auth G],
C [auth A],
D,
E [auth J]		IPR003877SPRY domainDomain
B [auth G],
C [auth A],
D,
E [auth J]		IPR001870B30.2/SPRY domainDomain
B [auth G],
C [auth A],
D,
E [auth J]		IPR009460Ryanodine Receptor TM 4-6Domain
B [auth G],
C [auth A],
D,
E [auth J]		IPR015925Ryanodine/Inositol 1,4,5-trisphosphate receptorFamily
B [auth G],
C [auth A],
D,
E [auth J]		IPR048581Ryanodine receptor, junctional solenoid domainDomain
B [auth G],
C [auth A],
D,
E [auth J]		IPR035910RyR/IP3 receptor binding core, RIH domain superfamilyHomologous Superfamily
B [auth G],
C [auth A],
D,
E [auth J]		IPR003032Ryanodine receptor RyrDomain
B [auth G],
C [auth A],
D,
E [auth J]		IPR035761Ryanodine receptor, SPRY domain 1Domain
B [auth G],
C [auth A],
D,
E [auth J]		IPR014821Inositol 1,4,5-trisphosphate/ryanodine receptorDomain
B [auth G],
C [auth A],
D,
E [auth J]		IPR035764Ryanodine receptor, SPRY domain 2Domain
B [auth G],
C [auth A],
D,
E [auth J]		IPR013333Ryanodine receptorFamily
B [auth G],
C [auth A],
D,
E [auth J]		IPR043136B30.2/SPRY domain superfamilyHomologous Superfamily
B [auth G],
C [auth A],
D,
E [auth J]		IPR011992EF-hand domain pairHomologous Superfamily
B [auth G],
C [auth A],
D,
E [auth J]		IPR005821Ion transport domainDomain
B [auth G],
C [auth A],
D,
E [auth J]		IPR035762Ryanodine receptor, SPRY domain 3Domain
A [auth B]IPR012632Scorpion calcineFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
OPMTransmembraneAlpha-helical polytopicIon channel (VIC) superfamilyRyanodine receptor

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
MemProtMDAnnotated as membrane protein by MemProtMD