8DO6
The structure of S. epidermidis Cas10-Csm bound to target RNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth E] | SCOP2B Superfamily | CRISPR-associated proteins | 8085903 | 3001554 | SCOP2B (2022-06-29) |
B [auth G] | SCOP2B Superfamily | CRISPR-associated proteins | 8085903 | 3001554 | SCOP2B (2022-06-29) |
C [auth F] | SCOP2B Superfamily | CRISPR-associated proteins | 8085903 | 3001554 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | PF03787 | e8do6E1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: PF03787 | ECOD (1.6) |
B [auth G] | PF03787 | e8do6G1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: PF03787 | ECOD (1.6) |
C [auth F] | PF03787 | e8do6F1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: PF03787 | ECOD (1.6) |
F [auth C] | PF03750 | e8do6C1 | A: alpha duplicates or obligate multimers | X: Crispr-associated protein Csm2 (From Topology) | H: Crispr-associated protein Csm2 (From Topology) | T: Crispr-associated protein Csm2 | F: PF03750 | ECOD (1.6) |
G [auth D] | PF03750 | e8do6D1 | A: alpha duplicates or obligate multimers | X: Crispr-associated protein Csm2 (From Topology) | H: Crispr-associated protein Csm2 (From Topology) | T: Crispr-associated protein Csm2 | F: PF03750 | ECOD (1.6) |
H [auth B] | PF03787 | e8do6B1 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: PF03787 | ECOD (1.6) |
H [auth B] | PF17953 | e8do6B2 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: PF17953 | ECOD (1.6) |
I [auth H] | PF03787 | e8do6H1 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: PF03787 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth E], B [auth G], C [auth F] | PF03787 | RAMP superfamily (RAMPs) | RAMP superfamily | - | Family |
F [auth C], G [auth D] | PF03750 | Csm2 Type III-A (Csm2_III-A) | Csm2 Type III-A | - | Family |
H [auth B] | PF17953 | CRISPR Csm4 C-terminal domain (Csm4_C) | CRISPR Csm4 C-terminal domain | Clustered, regularly interspaced, short palindromic repeat (CRISPR) loci play a pivotal role in the prokaryotic host defense system against invading genetic materials. The CRISPR loci are transcribed to produce CRISPR RNAs (crRNAs), which form interf ... | Domain |
H [auth B] | PF03787 | RAMP superfamily (RAMPs) | RAMP superfamily | - | Family |
I [auth H] | PF03787 | RAMP superfamily (RAMPs) | RAMP superfamily | - | Family |