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 8DGW | pdb_00008dgw

Crystal structure of HCoV-HKU1 spike stem helix peptide in complex with Fab of broadly neutralizing antibody CC95.108 isolated from a vaccinated COVID-19 convalescent

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth E]Carb_anhydrasee8dgwE1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Carb_anhydraseECOD (v295.2)
E [auth C]Carb_anhydrasee8dgwC1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Carb_anhydraseECOD (v295.2)
C [auth A]Carb_anhydrasee8dgwA1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Carb_anhydraseECOD (v295.2)
A [auth H]Carb_anhydrasee8dgwH1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Carb_anhydraseECOD (v295.2)
H [auth F]Carb_anhydrasee8dgwF1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Carb_anhydraseECOD (v295.2)
F [auth D]Carb_anhydrasee8dgwD1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Carb_anhydraseECOD (v295.2)
D [auth B]Carb_anhydrasee8dgwB1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Carb_anhydraseECOD (v295.2)
B [auth L]Carb_anhydrasee8dgwL1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Carb_anhydraseECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
G [auth E]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
E [auth C]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
C [auth A]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
A [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
H [auth F]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
F [auth D]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
D [auth B]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
B [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth H],
C [auth A],
E [auth C],
G [auth E]		Antibody CC95.108 Fab heavy chain---
B [auth L],
D [auth B],
F [auth D],
H [auth F]		Antibody CC95.108 Fab light chain---
I [auth G],
J [auth I],
K [auth J],
L [auth K]		Spike protein S2'-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth G],
J [auth I],
K [auth J],
L [auth K]		IPR018548Spike (S) protein S1 subunit, receptor-binding domain, betacoronavirusDomain
I [auth G],
J [auth I],
K [auth J],
L [auth K]		IPR032500Spike glycoprotein S1, N-terminal domain, betacoronavirus-likeDomain
I [auth G],
J [auth I],
K [auth J],
L [auth K]		IPR042578Spike glycoprotein, betacoronavirusFamily
I [auth G],
J [auth I],
K [auth J],
L [auth K]		IPR036326Spike S1 subunit, receptor binding domain superfamily, betacoronavirusHomologous Superfamily
I [auth G],
J [auth I],
K [auth J],
L [auth K]		IPR043002Spike glycoprotein, N-terminal domain superfamilyHomologous Superfamily
I [auth G],
J [auth I],
K [auth J],
L [auth K]		IPR044339Spike (S) protein S1 subunit, N-terminal domain, murine hepatitis virus-likeDomain
I [auth G],
J [auth I],
K [auth J],
L [auth K]		IPR044874Spike glycoprotein S2, coronavirus, heptad repeat 2Domain
I [auth G],
J [auth I],
K [auth J],
L [auth K]		IPR044873Spike glycoprotein S2, coronavirus, heptad repeat 1Domain
I [auth G],
J [auth I],
K [auth J],
L [auth K]		IPR043473Spike glycoprotein S2 superfamily, coronavirusHomologous Superfamily
I [auth G],
J [auth I],
K [auth J],
L [auth K]		IPR043607Coronavirus spike glycoprotein S1, C-terminalDomain
I [auth G],
J [auth I],
K [auth J],
L [auth K]		IPR002552Spike glycoprotein S2, coronavirusDomain