Crystal structure of potently neutralizing human monoclonal antibody 42D6 Fab in complex with MSP1-19
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F [auth A] | PDEase_I | e8dfgA1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PDEase_I | ECOD (v294.1) |
| E [auth B] | PDEase_I | e8dfgB1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PDEase_I | ECOD (v294.1) |
| D [auth M] | PDEase_I | e8dfgM1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PDEase_I | ECOD (v294.1) |
| B [auth L] | PDEase_I | e8dfgL1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PDEase_I | ECOD (v294.1) |
| C [auth I] | PDEase_I | e8dfgI1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PDEase_I | ECOD (v294.1) |
| A [auth H] | PDEase_I | e8dfgH1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PDEase_I | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D [auth M] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| B [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| C [auth I] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| A [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| B [auth L], D [auth M] | Light Chain | IGKV3 | Kappa | merozoite surface protein 1 | SAbDab (2026-03-27) |
| A [auth H], C [auth I] | Heavy Chain | IGHV4 | - | merozoite surface protein 1 | SAbDab (2026-03-27) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| E [auth B], F [auth A] | PF12946 | MSP1 EGF domain 1 (EGF_MSP1_1) | MSP1 EGF domain 1 | This EGF-like domain is found at the C-terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is le ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| E [auth B], F [auth A] | IPR010901 | Merozoite surface 1, C-terminal | Domain |
| E [auth B], F [auth A] | IPR024730 | Merozoite surface protein, EGF domain 1 | Domain |














