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Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair asymmetric DNA complex External Resource: Annotation Domain Annotation: SCOP2 Classification SCOP2 Database Homepage Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) B SCOP2B Superfamily Helix-hairpin-helix tandem 8039247 3000163 SCOP2B (2022-06-29) B SCOP2B Superfamily Helix-hairpin-helix tandem 8039248 3000163 SCOP2B (2022-06-29) B SCOP2B Superfamily Helix-hairpin-helix tandem 8039249 3000163 SCOP2B (2022-06-29) B SCOP2B Superfamily Topoisomerase V catalytic domain-like 8039252 3001992 SCOP2B (2022-06-29) B SCOP2B Superfamily Helix-hairpin-helix tandem 8039251 3000163 SCOP2B (2022-06-29) A SCOP2B Superfamily Topoisomerase V catalytic domain-like 8039252 3001992 SCOP2B (2022-06-29) A SCOP2B Superfamily Helix-hairpin-helix tandem 8039248 3000163 SCOP2B (2022-06-29) A SCOP2B Superfamily Helix-hairpin-helix tandem 8039249 3000163 SCOP2B (2022-06-29) A SCOP2B Superfamily Helix-hairpin-helix tandem 8039251 3000163 SCOP2B (2022-06-29) A SCOP2B Superfamily Helix-hairpin-helix tandem 8039247 3000163 SCOP2B (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) B PF13404 e8df9B3 A: alpha arrays X: HTH H: HTH T: tri-helical F: PF13404 ECOD (1.6) B F_UNCLASSIFIED e8df9B7 A: alpha arrays X: HhH/H2TH H: SAM/DNA-glycosylase T: SAM domain-like F: F_UNCLASSIFIED ECOD (1.6) B PF14520 e8df9B10 A: alpha arrays X: HhH/H2TH H: SAM/DNA-glycosylase T: SAM domain-like F: PF14520 ECOD (1.6) B PF21616,PF21872 e8df9B2 A: alpha arrays X: HhH/H2TH H: SAM/DNA-glycosylase T: SAM domain-like F: PF21616,PF21872 ECOD (1.6) B PF22409 e8df9B8 A: alpha arrays X: HhH/H2TH H: SAM/DNA-glycosylase T: SAM domain-like F: PF22409 ECOD (1.6) B F_UNCLASSIFIED e8df9B1 A: alpha bundles X: Topoisomerase V catalytic domain-like (From Topology) H: Topoisomerase V catalytic domain-like (From Topology) T: Topoisomerase V catalytic domain-like F: F_UNCLASSIFIED ECOD (1.6) A PF13404 e8df9A1 A: alpha arrays X: HTH H: HTH T: tri-helical F: PF13404 ECOD (1.6) A F_UNCLASSIFIED e8df9A5 A: alpha arrays X: HhH/H2TH H: SAM/DNA-glycosylase T: SAM domain-like F: F_UNCLASSIFIED ECOD (1.6) A PF14520 e8df9A3 A: alpha arrays X: HhH/H2TH H: SAM/DNA-glycosylase T: SAM domain-like F: PF14520 ECOD (1.6) A PF21616,PF21872 e8df9A9 A: alpha arrays X: HhH/H2TH H: SAM/DNA-glycosylase T: SAM domain-like F: PF21616,PF21872 ECOD (1.6) A PF22409 e8df9A6 A: alpha arrays X: HhH/H2TH H: SAM/DNA-glycosylase T: SAM domain-like F: PF22409 ECOD (1.6) A F_UNCLASSIFIED e8df9A8 A: alpha bundles X: Topoisomerase V catalytic domain-like (From Topology) H: Topoisomerase V catalytic domain-like (From Topology) T: Topoisomerase V catalytic domain-like F: F_UNCLASSIFIED ECOD (1.6)
Chains Accession Name Description Comments Source PF14520 Helix-hairpin-helix domain (HHH_5) Helix-hairpin-helix domain - Domain PF21616 Topoisomerase V, second (HhH)2 tandem domain (Topo-V_HhH_2_2nd) Topoisomerase V, second (HhH)2 tandem domain This domain is found in Topoisomerase V from Methanopyrus kandleri (Topo-V), is a bifunctional enzyme carrying both topoisomerase and DNA repair lyase activities. Topo-V consists of an N-terminal topoisomerase domain followed by 12 tandem (HhH)2 doma ... This domain is found in Topoisomerase V from Methanopyrus kandleri (Topo-V), is a bifunctional enzyme carrying both topoisomerase and DNA repair lyase activities. Topo-V consists of an N-terminal topoisomerase domain followed by 12 tandem (HhH)2 domains, showing four active sites. This entry represents the second of these tandem domains [1,4,5]. Less Domain PF13412 Winged helix-turn-helix DNA-binding (HTH_24) Winged helix-turn-helix DNA-binding - Domain
Chains Polymer Molecular Function Biological Process Cellular Component Topoisomerase V - C [auth S] DNA (33-MER) - - - D [auth T] DNA (33-MER) - - - E [auth U] DNA (5'-D(P*GP*CP*CP*TP*GP*CP*AP*CP*GP*AP*AP*GP*TP*AP*AP*GP*C)-3') - - - F [auth V] ,H [auth X] DNA (5'-D(P*TP*GP*CP*TP*TP*AP*CP*TP*TP*CP*GP*TP*GP*CP*AP*GP*GP*CP*CP*A)-3') - - - G [auth W] DNA (5'-D(P*GP*CP*CP*TP*GP*CP*AP*CP*GP*AP*AP*GP*TP*AP*AP*GP*CP*A)-3') - - -