8DF9 | pdb_00008df9

Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair asymmetric DNA complex

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyHelix-hairpin-helix tandem 8039247 3000163 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyHelix-hairpin-helix tandem 8039248 3000163 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyHelix-hairpin-helix tandem 8039249 3000163 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTopoisomerase V catalytic domain-like 8039252 3001992 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyHelix-hairpin-helix tandem 8039251 3000163 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyTopoisomerase V catalytic domain-like 8039252 3001992 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyHelix-hairpin-helix tandem 8039248 3000163 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyHelix-hairpin-helix tandem 8039249 3000163 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyHelix-hairpin-helix tandem 8039251 3000163 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyHelix-hairpin-helix tandem 8039247 3000163 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BHTH_AsnC-type_2e8df9B3 A: alpha arraysX: HTHH: HTHT: tri-helicalF: HTH_AsnC-type_2ECOD (1.6)
BHHH_5e8df9B10 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: HHH_5ECOD (1.6)
BHHH_2_1e8df9B7 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: HHH_2_1ECOD (1.6)
BEUF07927e8df9B8 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: EUF07927ECOD (1.6)
BEUF07924,EUF07925e8df9B2 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: EUF07924,EUF07925ECOD (1.6)
BEUF08090e8df9B1 A: alpha bundlesX: Topoisomerase V catalytic domain-like (From Topology)H: Topoisomerase V catalytic domain-like (From Topology)T: Topoisomerase V catalytic domain-likeF: EUF08090ECOD (1.6)
AHTH_AsnC-type_2e8df9A1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: HTH_AsnC-type_2ECOD (1.6)
AHHH_2_1e8df9A5 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: HHH_2_1ECOD (1.6)
AEUF07927e8df9A6 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: EUF07927ECOD (1.6)
AEUF07924,EUF07925e8df9A9 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: EUF07924,EUF07925ECOD (1.6)
AEUF08090e8df9A8 A: alpha bundlesX: Topoisomerase V catalytic domain-like (From Topology)H: Topoisomerase V catalytic domain-like (From Topology)T: Topoisomerase V catalytic domain-likeF: EUF08090ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth W]DNA (5'-D(P*GP*CP*CP*TP*GP*CP*AP*CP*GP*AP*AP*GP*TP*AP*AP*GP*CP*A)-3')---
F [auth V],
H [auth X]		DNA (5'-D(P*TP*GP*CP*TP*TP*AP*CP*TP*TP*CP*GP*TP*GP*CP*AP*GP*GP*CP*CP*A)-3')---
E [auth U]DNA (5'-D(P*GP*CP*CP*TP*GP*CP*AP*CP*GP*AP*AP*GP*TP*AP*AP*GP*C)-3')---
D [auth T]DNA (33-MER)---
C [auth S]DNA (33-MER)---
A, B
Topoisomerase V -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR049334Topoisomerase V, second (HhH)2 tandem domainDomain
A, B
IPR010994RuvA domain 2-likeHomologous Superfamily
A, B
IPR024065DNA topoisomerase V, catalytic domain superfamilyHomologous Superfamily
A, B
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A, B
IPR055246Topoisomerase V, HHH domainDomain
A, B
IPR003583Helix-hairpin-helix DNA-binding motif, class 1Domain
A, B
IPR054066SAM domain-likeDomain