8DAR
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex unbound but in the presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF17862 | e8darA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
A | PF00004 | e8darA4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
B | PF17862 | e8darB4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
B | PF00004 | e8darB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
C | PF17862 | e8darC4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
C | PF00004 | e8darC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
D | PF17862 | e8darD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
D | PF00004 | e8darD4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
E | PF17862 | e8darE4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
E | PF00004 | e8darE2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
F | PF17862 | e8darF2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
F | PF00004 | e8darF4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
G | PF05021 | e8darG4 | A: alpha arrays | X: C-terminal domain of Npl4 (From Topology) | H: C-terminal domain of Npl4 (From Topology) | T: C-terminal domain of Npl4 | F: PF05021 | ECOD (1.6) |
G | PF05021 | e8darG2 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF05021 | ECOD (1.6) |
G | PF05020 | e8darG3 | A: few secondary structure elements | X: Npl4 zinc binding domain (From Topology) | H: Npl4 zinc binding domain (From Topology) | T: Npl4 zinc binding domain | F: PF05020 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF05020 | NPL4 family, putative zinc binding region (zf-NPL4) | NPL4 family, putative zinc binding region | - | Family | |
PF05021 | NPL4 family (NPL4) | NPL4 family | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003959 | ATPase, AAA-type, core | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR029067 | CDC48 domain 2-like superfamily | Homologous Superfamily | |
IPR005938 | AAA ATPase, CDC48 family | Family | |
IPR003338 | CDC48, N-terminal subdomain | Domain | |
IPR004201 | CDC48, domain 2 | Domain | |
IPR009010 | Aspartate decarboxylase-like domain superfamily | Homologous Superfamily | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR041569 | AAA ATPase, AAA+ lid domain | Domain | |
IPR003960 | ATPase, AAA-type, conserved site | Conserved Site | |
IPR007716 | NPL4, zinc-binding putative | Domain | |
IPR007717 | Nuclear pore localisation protein NPL4, C-terminal | Domain | |
IPR016563 | Nuclear protein localization protein 4 | Family | |
IPR037518 | MPN domain | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR042299 | Ufd1-like, Nn domain | Homologous Superfamily | |
IPR004854 | Ubiquitin fusion degradation protein Ufd1-like | Family |