8D4E | pdb_00008d4e

Asymmetric unit of AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated wide(r) membrane tubes

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth S]SCOP2B SuperfamilySNARE-like 8082711 3001113 SCOP2B (2022-06-29)
H [auth M]SCOP2B Superfamilymu adaptin domain-like 8083652 3000810 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyARM repeat-like 8078176 3000116 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyARM repeat-like 8082787 3000116 SCOP2B (2022-06-29)
J [auth Z]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
B [auth H]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
A [auth C]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth S]e8d4eS1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
H [auth M]e8d4eM1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
F [auth G]e8d4eG1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
E [auth B]e8d4eB1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
C [auth N]e8d4eN1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
J [auth Z]e8d4eZ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
B [auth H]e8d4eH1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
A [auth C]e8d4eC1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth S]PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
H [auth M]PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
H [auth M]PF00928Adaptor complexes medium subunit family (Adap_comp_sub)Adaptor complexes medium subunit family- Family
F [auth G]PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat
A [auth C],
B [auth H],
J [auth Z]		PF00025ADP-ribosylation factor family (Arf)ADP-ribosylation factor familyPfam combines a number of different Prosite families together Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth S]AP-1 complex subunit sigma-3
H [auth M]AP-1 complex subunit mu-1
F [auth G]AP-1 complex subunit gamma-1
E [auth B]AP-1 complex subunit beta-1
D [auth Y]HLA class I histocompatibility antigen, A alpha chain
C [auth N],
G [auth L]		Protein Nef
A [auth C],
B [auth H],
J [auth Z]		ADP-ribosylation factor 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth S]IPR016635Adaptor protein complex, sigma subunitFamily
I [auth S]IPR011012Longin-like domain superfamilyHomologous Superfamily
I [auth S]IPR044733AP-1 complex subunit sigmaFamily
I [auth S]IPR000804Clathrin adaptor complex, small chainConserved Site
I [auth S]IPR022775AP complex, mu/sigma subunitDomain
H [auth M]IPR050431Adaptor complexes medium subunitFamily
H [auth M]IPR011012Longin-like domain superfamilyHomologous Superfamily
H [auth M]IPR022775AP complex, mu/sigma subunitDomain
H [auth M]IPR036168AP-2 complex subunit mu, C-terminal superfamilyHomologous Superfamily
H [auth M]IPR028565Mu homology domainDomain
H [auth M]IPR018240Clathrin adaptor, mu subunit, conserved siteConserved Site
H [auth M]IPR001392Clathrin adaptor, mu subunitFamily
F [auth G]IPR016024Armadillo-type foldHomologous Superfamily
F [auth G]IPR017107Adaptor protein complex AP-1, gamma subunitFamily
F [auth G]IPR011989Armadillo-like helicalHomologous Superfamily
F [auth G]IPR008153Gamma-adaptin ear (GAE) domainDomain
F [auth G]IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
F [auth G]IPR013041Clathrin adaptor, appendage, Ig-like subdomain superfamilyHomologous Superfamily
F [auth G]IPR050840Adaptor Complexes Large SubunitFamily
F [auth G]IPR008152Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomainDomain
E [auth B]IPR016024Armadillo-type foldHomologous Superfamily
E [auth B]IPR013037Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomainHomologous Superfamily
E [auth B]IPR000225ArmadilloRepeat
E [auth B]IPR026739AP complex subunit betaFamily
E [auth B]IPR011989Armadillo-like helicalHomologous Superfamily
E [auth B]IPR012295TBP domain superfamilyHomologous Superfamily
E [auth B]IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
E [auth B]IPR015151Beta-adaptin appendage, C-terminal subdomainDomain
E [auth B]IPR013041Clathrin adaptor, appendage, Ig-like subdomain superfamilyHomologous Superfamily
E [auth B]IPR008152Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomainDomain
E [auth B]IPR009028Coatomer/calthrin adaptor appendage, C-terminal subdomainHomologous Superfamily
E [auth B]IPR016342AP-1/2/4 complex subunit betaFamily
D [auth Y]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
D [auth Y]IPR010579MHC class I, alpha chain, C-terminalDomain
D [auth Y]IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
D [auth Y]IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
D [auth Y]IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
D [auth Y]IPR013783Immunoglobulin-like foldHomologous Superfamily
D [auth Y]IPR007110Immunoglobulin-like domainDomain
D [auth Y]IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
D [auth Y]IPR003597Immunoglobulin C1-setDomain
D [auth Y]IPR011161MHC class I-like antigen recognition-likeDomain
D [auth Y]IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
C [auth N],
G [auth L]		IPR001558HIV negative factor NefFamily
C [auth N],
G [auth L]		IPR027481HIV-1 Nef protein, core domain superfamilyHomologous Superfamily
C [auth N],
G [auth L]		IPR027480HIV-1 Nef protein, anchor domain superfamilyHomologous Superfamily
A [auth C],
B [auth H],
J [auth Z]		IPR045872ADP-ribosylation factor 1-5Family
A [auth C],
B [auth H],
J [auth Z]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth C],
B [auth H],
J [auth Z]		IPR005225Small GTP-binding domainDomain
A [auth C],
B [auth H],
J [auth Z]		IPR024156Small GTPase superfamily, ARF typeFamily
A [auth C],
B [auth H],
J [auth Z]		IPR006689Small GTPase superfamily, ARF/SAR typeFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth S]Pharos:  Q96PC3
E [auth B]Pharos:  Q10567
D [auth Y]Pharos:  P04439
A [auth C],
B [auth H],
J [auth Z]		Pharos:  P84077

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
mpstrucMONOTOPIC MEMBRANE PROTEINSADP-Ribosylation FactorsADP-ribosylation factor (ARF1)/AP-1 complex, with HIV1-Nef and MHC-I lipopeptide, narrow membrane tubes