8CWO | pdb_00008cwo

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth D]e8cwoD1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
E [auth H]e8cwoH1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
G [auth L]e8cwoL1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
H [auth O]e8cwoO1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
J [auth R]e8cwoR1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
L [auth P]e8cwoP1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
I [auth Q]e8cwoQ1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
F [auth K]e8cwoK1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
D [auth F]e8cwoF1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
C [auth E]e8cwoE1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
N [auth B]e8cwoB1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
K [auth T]e8cwoT1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
16S ribosomal RNA---
B [auth D]30S ribosomal protein S4
E [auth H]30S ribosomal protein S8
G [auth L]30S ribosomal protein S12
H [auth O]30S ribosomal protein S15
J [auth R]30S ribosomal protein S18
L [auth P]30S ribosomal protein S16
I [auth Q]30S ribosomal protein S17
F [auth K]30S ribosomal protein S11
D [auth F]30S ribosomal protein S6
C [auth E]30S ribosomal protein S5
O [auth Y]mRNA---
N [auth B]30S ribosomal protein S2
M [auth X]30S ribosomal protein bS22---
K [auth T]30S ribosomal protein S20

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth D]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
B [auth D]IPR002942RNA-binding S4 domainDomain
B [auth D]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
B [auth D]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
B [auth D]IPR022801Small ribosomal subunit protein uS4Family
B [auth D]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
E [auth H]IPR000630Small ribosomal subunit protein uS8Family
E [auth H]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
E [auth H]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
G [auth L]IPR006032Small ribosomal subunit protein uS12Family
G [auth L]IPR005679Ribosomal protein uS12, bacteriaFamily
G [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
H [auth O]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
H [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
H [auth O]IPR000589Small ribosomal subunit protein uS15Family
J [auth R]IPR001648Small ribosomal subunit protein bS18Family
J [auth R]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
J [auth R]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
L [auth P]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
L [auth P]IPR000307Small ribosomal subunit protein bS16Family
L [auth P]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
I [auth Q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
I [auth Q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
I [auth Q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth Q]IPR000266Small ribosomal subunit protein uS17Family
F [auth K]IPR001971Small ribosomal subunit protein uS11Family
F [auth K]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
F [auth K]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
F [auth K]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
D [auth F]IPR000529Small ribosomal subunit protein bS6Family
D [auth F]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
D [auth F]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
D [auth F]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
C [auth E]IPR000851Small ribosomal subunit protein uS5Family
C [auth E]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
C [auth E]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
C [auth E]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
C [auth E]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
C [auth E]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
C [auth E]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
N [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
N [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
N [auth B]IPR001865Small ribosomal subunit protein uS2Family
K [auth T]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
K [auth T]IPR002583Small ribosomal subunit protein bS20Family