8CVO | pdb_00008cvo

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth U]	F_UNCLASSIFIED	e8cvoU1	A: a+b two layers	X: Ribosomal protein S19 (From Topology)	H: Ribosomal protein S19 (From Topology)	T: Ribosomal protein S19	F: F_UNCLASSIFIED	ECOD (1.6)
H [auth S]	F_UNCLASSIFIED	e8cvoS1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: F_UNCLASSIFIED	ECOD (1.6)
G [auth N]	F_UNCLASSIFIED	e8cvoN1	A: alpha arrays	X: HhH/H2TH	H: H2TH (From Topology)	T: H2TH	F: F_UNCLASSIFIED	ECOD (1.6)
F [auth M]	F_UNCLASSIFIED	e8cvoM1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S10 (From Topology)	T: Ribosomal protein S10	F: F_UNCLASSIFIED	ECOD (1.6)
E [auth J]	F_UNCLASSIFIED	e8cvoJ1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: F_UNCLASSIFIED	ECOD (1.6)
D [auth I]	F_UNCLASSIFIED	e8cvoI1	A: alpha arrays	X: Ribosomal protein S7 (From Topology)	H: Ribosomal protein S7 (From Topology)	T: Ribosomal protein S7	F: F_UNCLASSIFIED	ECOD (1.6)
C [auth G]	F_UNCLASSIFIED	e8cvoG2	A: a+b two layers	X: T-fold	H: Ribosomal protein S3-C (From Topology)	T: Ribosomal protein S3-C	F: F_UNCLASSIFIED	ECOD (1.6)
C [auth G]	F_UNCLASSIFIED	e8cvoG1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: KH-domains	T: Prokaryotic type KH domain (KH-domain type II)	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth E]	F_UNCLASSIFIED	e8cvoE1	A: a+b two layers	X: dsRBD-like	H: dsRNA-binding domain-like (From Topology)	T: dsRNA-binding domain-like	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
I [auth U]	PF00203	Ribosomal protein S19 (Ribosomal_S19)	Ribosomal protein S19		Domain
H [auth S]	PF00253	Ribosomal protein S14p/S29e (Ribosomal_S14)	Ribosomal protein S14p/S29e	-	Family
G [auth N]	PF00416	Ribosomal protein S13/S18 (Ribosomal_S13)	Ribosomal protein S13/S18	-	Family
F [auth M]	PF00338	Ribosomal protein S10p/S20e (Ribosomal_S10)	Ribosomal protein S10p/S20e	This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.	Domain
E [auth J]	PF00380	Ribosomal protein S9/S16 (Ribosomal_S9)	Ribosomal protein S9/S16	-	Family
C [auth G]	PF07650	KH domain (KH_2)	KH domain		Domain
C [auth G]	PF00189	Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)	Ribosomal protein S3, C-terminal domain	This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.	Domain
B [auth E]	PF00333	Ribosomal protein S5, N-terminal domain (Ribosomal_S5)	Ribosomal protein S5, N-terminal domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth U]	30S ribosomal protein S19	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
H [auth S]	30S ribosomal protein S14 type Z	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome RNA binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
G [auth N]	30S ribosomal protein S13	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome
F [auth M]	30S ribosomal protein S10	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
E [auth J]	30S ribosomal protein S9	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
D [auth I]	30S ribosomal protein S7	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
C [auth G]	30S ribosomal protein S3	RNA binding binding nucleic acid binding mRNA binding rRNA binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
B [auth E]	30S ribosomal protein S5	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
A	16S ribosomal RNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth U]	IPR005732	Small ribosomal subunit protein uS19, bacteria	Family
I [auth U]	IPR002222	Small ribosomal subunit protein uS19	Family
I [auth U]	IPR023575	Small ribosomal subunit protein uS19, superfamily	Homologous Superfamily
I [auth U]	IPR020934	Small ribosomal subunit protein uS19, conserved site	Conserved Site
H [auth S]	IPR023053	Small ribosomal subunit protein uS14, bacteria	Family
H [auth S]	IPR001209	Small ribosomal subunit protein uS14	Family
H [auth S]	IPR018271	Small ribosomal subunit protein uS14, conserved site	Conserved Site
H [auth S]	IPR043140	Small ribosomal subunit protein uS14 superfamily	Homologous Superfamily
G [auth N]	IPR027437	Small ribosomal subunit protein uS13, C-terminal	Homologous Superfamily
G [auth N]	IPR001892	Small ribosomal subunit protein uS13	Family
G [auth N]	IPR018269	Small ribosomal subunit protein uS13, conserved site	Conserved Site
G [auth N]	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
G [auth N]	IPR019980	Small ribosomal subunit protein uS13, bacteria	Family
F [auth M]	IPR001848	Small ribosomal subunit protein uS10	Family
F [auth M]	IPR027486	Small ribosomal subunit protein uS10 domain	Domain
F [auth M]	IPR036838	Small ribosomal subunit protein uS10 domain superfamily	Homologous Superfamily
F [auth M]	IPR018268	Small ribosomal subunit protein uS10, conserved site	Conserved Site
E [auth J]	IPR020574	Small ribosomal subunit protein uS9, conserved site	Conserved Site
E [auth J]	IPR023035	Small ribosomal subunit protein uS9, bacteria/plastid	Family
E [auth J]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
E [auth J]	IPR000754	Small ribosomal subunit protein uS9	Family
E [auth J]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
D [auth I]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
D [auth I]	IPR000235	Small ribosomal subunit protein uS7	Family
D [auth I]	IPR005717	Small ribosomal subunit protein uS7, bacteria/organella	Family
D [auth I]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
D [auth I]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
C [auth G]	IPR005704	Small ribosomal subunit protein uS3, bacteria	Family
C [auth G]	IPR001351	Small ribosomal subunit protein uS3, C-terminal	Domain
C [auth G]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
C [auth G]	IPR004087	K Homology domain	Domain
C [auth G]	IPR004044	K Homology domain, type 2	Domain
C [auth G]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
C [auth G]	IPR036419	Ribosomal protein S3, C-terminal domain superfamily	Homologous Superfamily
C [auth G]	IPR018280	Small ribosomal subunit protein uS3, conserved site	Conserved Site
B [auth E]	IPR005712	Small ribosomal subunit protein uS5, bacteria	Family
B [auth E]	IPR000851	Small ribosomal subunit protein uS5	Family
B [auth E]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
B [auth E]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
B [auth E]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
B [auth E]	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
B [auth E]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily