8CVN | pdb_00008cvn

Cryo-EM Structure of Human 15-PGDH in Complex with Small Molecule SW209415

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	SDR-like	8057209	3000038	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SDR-like	8057209	3000038	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e8cvnA1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F:	ECOD (v294.1)
B		e8cvnB1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F:	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00106	short chain dehydrogenase (adh_short)	short chain dehydrogenase	This family contains a wide variety of dehydrogenases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	15-hydroxyprostaglandin dehydrogenase [NAD(+)]	prostaglandin E receptor activity prostanoid receptor activity molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity icosanoid receptor activity prostaglandin receptor activity 15-hydroxyicosatetraenoate dehydrogenase activity oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors catalytic activity NAD+ binding prostaglandin E receptor activity prostanoid receptor activity molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity icosanoid receptor activity prostaglandin receptor activity 15-hydroxyicosatetraenoate dehydrogenase activity oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors catalytic activity NAD+ binding NAD binding binding nucleotide binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding heterocyclic compound binding small molecule binding 15-hydroxyprostaglandin dehydrogenase (NAD+) activity identical protein binding protein binding	developmental process multicellular organismal process blood vessel morphogenesis tube development artery development ductus arteriosus closure vasculature development circulatory system development multicellular organism development anatomical structure morphogenesis tube morphogenesis anatomical structure development artery morphogenesis blood vessel development developmental process multicellular organismal process blood vessel morphogenesis tube development artery development ductus arteriosus closure vasculature development circulatory system development multicellular organism development anatomical structure morphogenesis tube morphogenesis anatomical structure development artery morphogenesis blood vessel development system development icosanoid metabolic process fatty acid metabolic process oxoacid metabolic process carboxylic acid metabolic process primary metabolic process organic acid metabolic process small molecule metabolic process metabolic process cellular process lipoxygenase pathway monocarboxylic acid metabolic process lipid metabolic process multi-multicellular organism process reproductive process female pregnancy multi-organism reproductive process cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cell communication thrombin-activated receptor signaling pathway G protein-coupled receptor signaling pathway signal transduction negative regulation of cellular process negative regulation of biological process negative regulation of cell cycle cell cycle regulation of cell cycle positive regulation of programmed cell death regulation of apoptotic process positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death positive regulation of cellular process ovulation sexual reproduction multicellular organismal reproductive process female gamete generation gamete generation prostaglandin metabolic process unsaturated fatty acid metabolic process prostanoid metabolic process regulation of vascular associated smooth muscle cell proliferation cell population proliferation positive regulation of vascular associated smooth muscle cell proliferation regulation of smooth muscle cell proliferation positive regulation of cell population proliferation smooth muscle cell proliferation positive regulation of smooth muscle cell proliferation regulation of cell population proliferation muscle cell proliferation vascular associated smooth muscle cell proliferation parturition response to alcohol response to chemical response to oxygen-containing compound response to ethanol animal organ development kidney development renal system development biological process involved in interspecies interaction between organisms response to lipid response to other organism response to external stimulus response to lipopolysaccharide response to biotic stimulus response to bacterium response to external biotic stimulus response to molecule of bacterial origin response to estradiol cellular response to growth factor stimulus cell surface receptor protein serine/threonine kinase signaling pathway cell surface receptor signaling pathway cellular response to transforming growth factor beta stimulus response to endogenous stimulus cellular response to endogenous stimulus response to transforming growth factor beta transforming growth factor beta receptor signaling pathway response to growth factor transforming growth factor beta receptor superfamily signaling pathway enzyme-linked receptor protein signaling pathway lipid catabolic process catabolic process regulation of lipid metabolic process icosanoid catabolic process regulation of prostaglandin catabolic process regulation of catabolic process regulation of lipid catabolic process fatty acid derivative catabolic process regulation of primary metabolic process fatty acid derivative metabolic process prostaglandin catabolic process prostanoid catabolic process regulation of metabolic process	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol cell periphery basal part of cell extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol cell periphery basal part of cell membrane plasma membrane basal plasma membrane plasma membrane region basolateral plasma membrane nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR002347	Short-chain dehydrogenase/reductase SDR	Family
A, B	IPR020904	Short-chain dehydrogenase/reductase, conserved site	Conserved Site
A, B	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P15428	primary hypertrophic osteoarthropathy prostate cancer thyroid gland carcinoma hypertrophic osteoarthropathy, primary, autosomal recessive, 1 isolated congenital digital clubbing thyroid adenoma malignant glioma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma adenoma periodontitis Carcinoma, Medullary Currarino triad head and neck cancer primary hypertrophic osteoarthropathy prostate cancer thyroid gland carcinoma hypertrophic osteoarthropathy, primary, autosomal recessive, 1 isolated congenital digital clubbing thyroid adenoma malignant glioma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma adenoma periodontitis Carcinoma, Medullary Currarino triad head and neck cancer spina bifida ulcerative colitis lung carcinoma malignant pancreatic neoplasm non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm astrocytic tumor cranio-osteoarthropathy cystic fibrosis rheumatoid arthritis intellectual disability lung adenocarcinoma malignant colon neoplasm medullary thyroid gland carcinoma oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atopic eczema primitive neuroectodermal tumor psoriasis glioblastoma sinusitis hypertrophic osteoarthropathy, primary, autosomal dominant thyroid cancer tuberculosis interstitial cystitis lung cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.