8CO6 | pdb_00008co6

Subtomogram average of Immature Rotavirus TLP penton


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CA [auth r]F_UNCLASSIFIEDe8co6r1 A: a+b complex topologyX: Inner layer core protein p3-related (From Topology)H: Inner layer core protein p3-related (From Topology)T: Inner layer core protein p3-relatedF: F_UNCLASSIFIEDECOD (1.6)
BA [auth q]F_UNCLASSIFIEDe8co6q1 A: a+b complex topologyX: Inner layer core protein p3-related (From Topology)H: Inner layer core protein p3-related (From Topology)T: Inner layer core protein p3-relatedF: F_UNCLASSIFIEDECOD (1.6)
Z [auth n]F_UNCLASSIFIEDe8co6n2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
Z [auth n]F_UNCLASSIFIEDe8co6n1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
Y [auth m]F_UNCLASSIFIEDe8co6m2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
Y [auth m]F_UNCLASSIFIEDe8co6m1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
X [auth l]F_UNCLASSIFIEDe8co6l2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
X [auth l]F_UNCLASSIFIEDe8co6l1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
W [auth k]F_UNCLASSIFIEDe8co6k1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
W [auth k]F_UNCLASSIFIEDe8co6k2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
V [auth j]F_UNCLASSIFIEDe8co6j2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
V [auth j]F_UNCLASSIFIEDe8co6j1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
U [auth i]F_UNCLASSIFIEDe8co6i2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
U [auth i]F_UNCLASSIFIEDe8co6i1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
T [auth h]F_UNCLASSIFIEDe8co6h1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
T [auth h]F_UNCLASSIFIEDe8co6h2 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
S [auth g]F_UNCLASSIFIEDe8co6g2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
S [auth g]F_UNCLASSIFIEDe8co6g1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
R [auth f]F_UNCLASSIFIEDe8co6f2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
R [auth f]F_UNCLASSIFIEDe8co6f1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
Q [auth e]F_UNCLASSIFIEDe8co6e2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
Q [auth e]F_UNCLASSIFIEDe8co6e1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
P [auth d]F_UNCLASSIFIEDe8co6d2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
P [auth d]F_UNCLASSIFIEDe8co6d1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
AA [auth o]F_UNCLASSIFIEDe8co6o2 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: F_UNCLASSIFIEDECOD (1.6)
AA [auth o]F_UNCLASSIFIEDe8co6o1 A: alpha bundlesX: A virus capsid protein alpha-helical domain (From Topology)H: A virus capsid protein alpha-helical domain (From Topology)T: A virus capsid protein alpha-helical domainF: F_UNCLASSIFIEDECOD (1.6)
OF_UNCLASSIFIEDe8co6O2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
OF_UNCLASSIFIEDe8co6O1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
NF_UNCLASSIFIEDe8co6N2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
NF_UNCLASSIFIEDe8co6N1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
MF_UNCLASSIFIEDe8co6M1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
MF_UNCLASSIFIEDe8co6M2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
LF_UNCLASSIFIEDe8co6L1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
LF_UNCLASSIFIEDe8co6L2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
KF_UNCLASSIFIEDe8co6K2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
KF_UNCLASSIFIEDe8co6K1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
JF_UNCLASSIFIEDe8co6J1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
JF_UNCLASSIFIEDe8co6J2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
IF_UNCLASSIFIEDe8co6I2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
IF_UNCLASSIFIEDe8co6I1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
HF_UNCLASSIFIEDe8co6H1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
HF_UNCLASSIFIEDe8co6H2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
GF_UNCLASSIFIEDe8co6G1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
GF_UNCLASSIFIEDe8co6G2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
FF_UNCLASSIFIEDe8co6F2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
FF_UNCLASSIFIEDe8co6F1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
EF_UNCLASSIFIEDe8co6E1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
EF_UNCLASSIFIEDe8co6E2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe8co6D2 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)T: Jelly-roll domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe8co6D1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)T: Flavodoxin-like domain in outer capsid glycoprotein VP7F: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8co6C2 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8co6C1 A: beta sandwichesX: VP4 membrane interaction domain (From Topology)H: VP4 membrane interaction domain (From Topology)T: VP4 membrane interaction domainF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8co6C3 A: alpha complex topologyX: Helical domain in outer capsid protein VP4 (From Topology)H: Helical domain in outer capsid protein VP4 (From Topology)T: Helical domain in outer capsid protein VP4F: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe8co6B2 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe8co6B1 A: beta sandwichesX: VP4 membrane interaction domain (From Topology)H: VP4 membrane interaction domain (From Topology)T: VP4 membrane interaction domainF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe8co6B3 A: alpha complex topologyX: Helical domain in outer capsid protein VP4 (From Topology)H: Helical domain in outer capsid protein VP4 (From Topology)T: Helical domain in outer capsid protein VP4F: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe8co6A1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe8co6A2 A: beta sandwichesX: VP4 membrane interaction domain (From Topology)H: VP4 membrane interaction domain (From Topology)T: VP4 membrane interaction domainF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe8co6A3 A: alpha complex topologyX: Helical domain in outer capsid protein VP4 (From Topology)H: Helical domain in outer capsid protein VP4 (From Topology)T: Helical domain in outer capsid protein VP4F: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D, E, F, G, H
PF00980Rotavirus major capsid protein VP6 (Rota_Capsid_VP6)Rotavirus major capsid protein VP6- Family
A, B, C
PF00426Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain (VP4_haemagglut)Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domainThis entry represents the N-terminal concanavalin-like domain from the VP4 protein of rotavirus. Domain
A, B, C
PF17477Rotavirus VP4 membrane interaction domain (Rota_VP4_MID)Rotavirus VP4 membrane interaction domainThis entry represents the VP4 membrane interaction domain. Domain
A, B, C
PF17478Rotavirus VP4 helical domain (VP4_helical)Rotavirus VP4 helical domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
BA [auth q],
CA [auth r]
Inner capsid protein VP2 -
Intermediate capsid protein VP6
D, E, F, G, H
Outer capsid glycoprotein VP7
A, B, C
Outer capsid protein VP4-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
BA [auth q],
CA [auth r]
IPR007779Rotavirus VP2Family
IPR001385Rotavirus A/C, major capsid protein VP6Family
IPR008935Virus capsid protein, alpha-helicalHomologous Superfamily
IPR008980Viral capsid/haemagglutinin proteinHomologous Superfamily
D, E, F, G, H
IPR042207Glycoprotein VP7, domain 1Homologous Superfamily
D, E, F, G, H
IPR001963Glycoprotein VP7Family
D, E, F, G, H
IPR042210Glycoprotein VP7, domain 2Homologous Superfamily
A, B, C
IPR000416Haemagglutinin outer capsid protein VP4, concanavalin-like domainDomain
A, B, C
IPR035330Rotavirus VP4, membrane interaction domainDomain
A, B, C
IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
A, B, C
IPR035329Rotavirus VP4 helical domainDomain
A, B, C
IPR042546Outer capsid protein VP4Family
A, B, C
IPR038017Rotavirus VP4, membrane interaction domain superfamilyHomologous Superfamily