8CO6 | pdb_00008co6

Subtomogram average of Immature Rotavirus TLP penton


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AA [auth o]Fze8co6o1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
P [auth d]Fze8co6d1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
Q [auth e]Fze8co6e1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
R [auth f]Fze8co6f1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
S [auth g]Fze8co6g1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
T [auth h]Fze8co6h1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
U [auth i]Fze8co6i1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
V [auth j]Fze8co6j1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
W [auth k]Fze8co6k1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
X [auth l]Fze8co6l1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
Y [auth m]Fze8co6m1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
Z [auth n]Fze8co6n1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
BA [auth q]Fze8co6q1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
CA [auth r]Fze8co6r1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
DFze8co6D1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
EFze8co6E1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
FFze8co6F1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
GFze8co6G1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
HFze8co6H1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
IFze8co6I1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
JFze8co6J1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
KFze8co6K1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
LFze8co6L1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
MFze8co6M1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
NFze8co6N1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
OFze8co6O1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
AFze8co6A1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
BFze8co6B1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)
CFze8co6C1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: FzECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Intermediate capsid protein VP6
BA [auth q],
CA [auth r]
Inner capsid protein VP2 -
D, E, F, G, H
Outer capsid glycoprotein VP7
A, B, C
Outer capsid protein VP4-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001385Rotavirus A/C, major capsid protein VP6Family
IPR008935Virus capsid protein, alpha-helicalHomologous Superfamily
IPR008980Viral capsid/haemagglutinin proteinHomologous Superfamily
BA [auth q],
CA [auth r]
IPR007779Rotavirus VP2Family
D, E, F, G, H
IPR042207Glycoprotein VP7, domain 1Homologous Superfamily
D, E, F, G, H
IPR001963Glycoprotein VP7Family
D, E, F, G, H
IPR042210Glycoprotein VP7, domain 2Homologous Superfamily
A, B, C
IPR000416Haemagglutinin outer capsid protein VP4, concanavalin-like domainDomain
A, B, C
IPR035330Rotavirus VP4, membrane interaction domainDomain
A, B, C
IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
A, B, C
IPR035329Rotavirus VP4 helical domainDomain
A, B, C
IPR042546Outer capsid protein VP4Family
A, B, C
IPR038017Rotavirus VP4, membrane interaction domain superfamilyHomologous Superfamily