Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like8054671 3000071 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMHC antigen-recognition domain8040455 3000521 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF07654e8cmbA2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
APF00993e8cmbA1 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: PF00993ECOD (1.6)
BPF07654e8cmbB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
BPF00969e8cmbB2 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: PF00969ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF09408Betacoronavirus spike glycoprotein S1, receptor binding (bCoV_S1_RBD)Betacoronavirus spike glycoprotein S1, receptor bindingThis entry represents the receptor binding domain (S1 RBD) of the betacoronavirus spike glycoprotein. The spike glycoprotein is arranged in trimers on the surface of the viral membrane and is essential for viral entry. The spike protein is transla ...This entry represents the receptor binding domain (S1 RBD) of the betacoronavirus spike glycoprotein. The spike glycoprotein is arranged in trimers on the surface of the viral membrane and is essential for viral entry. The spike protein is translated as a large polypeptide that is subsequently cleaved to the distal S1, responsible for receptor binding, and the membrane-anchored S2 responsible for membrane fusion [1]. The coronavirus (SARS-CoV) S1 subunit is composed of two distinct domains: an N-terminal domain (S1 NTD) and a receptor-binding domain (S1 RBD) also referred to as the S1 CTD or domain B. Each of these domains have been implicated in binding to host receptors. However, most coronaviruses are not known to utilise both the S1 NTD and S1 RBD for viral entry [2]. SARS-CoV makes use of its S1 RBD to bind to the human angiotensin-converting enzyme 2 (ACE2) as its host receptor [3,4].
Domain
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domain- Domain
PF00993Class II histocompatibility antigen, alpha domain (MHC_II_alpha)Class II histocompatibility antigen, alpha domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Spike protein S2'
HLA class II histocompatibility antigen, DR alpha chain
Human leukocyte antigen DR beta chain allotype DR1 (DRB1*0101)-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR044873Spike glycoprotein S2, coronavirus, heptad repeat 1Domain
IPR044366Spike (S) protein S1 subunit, receptor-binding domain, SARS-CoV-2Domain
IPR018548Spike (S) protein S1 subunit, receptor-binding domain, betacoronavirusDomain
IPR044341Spike (S) protein S1 subunit, N-terminal domain, SARS-CoV-likeDomain
IPR032500Spike glycoprotein S1, N-terminal domain, betacoronavirus-likeDomain
IPR042578Spike glycoprotein, betacoronavirusFamily
IPR036326Spike S1 subunit, receptor binding domain superfamily, betacoronavirusHomologous Superfamily
IPR043002Spike glycoprotein, N-terminal domain superfamilyHomologous Superfamily
IPR044874Spike glycoprotein S2, coronavirus, heptad repeat 2Domain
IPR043473Spike glycoprotein S2 superfamily, coronavirusHomologous Superfamily
IPR043607Coronavirus spike glycoprotein S1, C-terminalDomain
IPR002552Spike glycoprotein S2, coronavirusDomain
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR003597Immunoglobulin C1-setDomain
IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
IPR014745MHC class II, alpha/beta chain, N-terminalHomologous Superfamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR001003MHC class II, alpha chain, N-terminalDomain
IPR000353MHC class II, beta chain, N-terminalDomain
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR014745MHC class II, alpha/beta chain, N-terminalHomologous Superfamily
IPR003597Immunoglobulin C1-setDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP01903