structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
A [auth B] | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Core histone-like | 8041278 | 3001387 | SCOP2B (2022-06-29) |
E [auth G] | SCOP2B Superfamily | Core histone-like | 8041278 | 3001387 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
F [auth H] | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
I [auth K] | SCOP2B Superfamily | Tudor/PWWP/MBT domain-like | 8081869 | 3000404 | SCOP2B (2022-06-29) |
J [auth A] | SCOP2B Superfamily | Core histone-like | 8041272 | 3001387 | SCOP2B (2022-06-29) |
K [auth E] | SCOP2B Superfamily | Core histone-like | 8041272 | 3001387 | SCOP2B (2022-06-29) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A [auth B] | PF15511 | e8cbqB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
D [auth F] | PF15511 | e8cbqF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
B [auth C] | PF00125,PF16211 | e8cbqC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
E [auth G] | PF00125,PF16211 | e8cbqG1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
C [auth D] | PF00125 | e8cbqD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
F [auth H] | PF00125 | e8cbqH1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
I [auth K] | PF00855 | e8cbqK1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00855 | ECOD (1.6) |
J [auth A] | PF00125 | e8cbqA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
K [auth E] | PF00125 | e8cbqE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
Chains | Accession | Name | Type |
---|
A [auth B], D [auth F] | IPR009072 | Histone-fold | Homologous Superfamily |
A [auth B], D [auth F] | IPR001951 | Histone H4 | Family |
A [auth B], D [auth F] | IPR035425 | CENP-T/Histone H4, histone fold | Domain |
A [auth B], D [auth F] | IPR019809 | Histone H4, conserved site | Conserved Site |
A [auth B], D [auth F] | IPR004823 | TATA box binding protein associated factor (TAF), histone-like fold domain | Domain |
B [auth C], E [auth G] | IPR009072 | Histone-fold | Homologous Superfamily |
B [auth C], E [auth G] | IPR007125 | Histone H2A/H2B/H3 | Domain |
B [auth C], E [auth G] | IPR002119 | Histone H2A | Family |
B [auth C], E [auth G] | IPR032454 | Histone H2A, C-terminal domain | Domain |
B [auth C], E [auth G] | IPR032458 | Histone H2A conserved site | Conserved Site |
C [auth D], F [auth H] | IPR009072 | Histone-fold | Homologous Superfamily |
C [auth D], F [auth H] | IPR007125 | Histone H2A/H2B/H3 | Domain |
C [auth D], F [auth H] | IPR000558 | Histone H2B | Family |
I [auth K] | IPR021567 | Lens epithelium-derived growth factor, integrase-binding domain | Domain |
I [auth K] | IPR036218 | HIV integrase-binding domain superfamily | Homologous Superfamily |
I [auth K] | IPR000313 | PWWP domain | Domain |
I [auth K] | IPR035441 | TFIIS/LEDGF domain superfamily | Homologous Superfamily |
J [auth A], K [auth E] | IPR009072 | Histone-fold | Homologous Superfamily |
J [auth A], K [auth E] | IPR007125 | Histone H2A/H2B/H3 | Domain |
J [auth A], K [auth E] | IPR000164 | Histone H3/CENP-A | Family |