8CA1 | pdb_00008ca1

Cryo-EM structure of the ACADVL dimer from Mus musculus.

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A]	PF21343	ACAD9/ACADV, C-terminal domain (ACAD9-ACADV_C)	ACAD9/ACADV, C-terminal domain	Acyl-CoA dehydrogenases catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with reduction of enzyme-bound FAD. They consist of an N-terminal all-alpha domain, a middle open (5,8) barrel do ...	Acyl-CoA dehydrogenases catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with reduction of enzyme-bound FAD. They consist of an N-terminal all-alpha domain, a middle open (5,8) barrel domain and a four-helical bundle C-terminal domain. Members of the acyl-CoA dehydrogenase family differ in the number of C-terminal domains. This entry represents the second C-terminal domain, from ACAD9 and Very long-chain specific acyl-CoA dehydrogenase (ACADV) [1].	Domain
A [auth B], B [auth A]	PF02771	Acyl-CoA dehydrogenase, N-terminal domain (Acyl-CoA_dh_N)	Acyl-CoA dehydrogenase, N-terminal domain	The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain.	Domain
A [auth B], B [auth A]	PF02770	Acyl-CoA dehydrogenase, middle domain (Acyl-CoA_dh_M)	Acyl-CoA dehydrogenase, middle domain	Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold.	Domain
A [auth B], B [auth A]	PF00441	Acyl-CoA dehydrogenase, C-terminal domain (Acyl-CoA_dh_1)	Acyl-CoA dehydrogenase, C-terminal domain	C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A]	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor oxidoreductase activity acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity very-long-chain fatty acyl-CoA dehydrogenase activity flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor oxidoreductase activity acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity very-long-chain fatty acyl-CoA dehydrogenase activity flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding fatty-acyl-CoA binding acyl-CoA binding lipid binding fatty acid derivative binding sulfur compound binding long-chain fatty acyl-CoA dehydrogenase activity identical protein binding protein binding	response to stimulus response to stress response to abiotic stimulus response to cold response to temperature stimulus fatty acid metabolic process lipid catabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process primary metabolic process lipid modification organic acid metabolic process organic acid catabolic process response to stimulus response to stress response to abiotic stimulus response to cold response to temperature stimulus fatty acid metabolic process lipid catabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process primary metabolic process lipid modification organic acid metabolic process organic acid catabolic process fatty acid catabolic process monocarboxylic acid catabolic process fatty acid oxidation carboxylic acid catabolic process fatty acid beta-oxidation metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process lipid oxidation small molecule catabolic process lipid metabolic process negative regulation of fatty acid oxidation regulation of cellular process negative regulation of small molecule metabolic process ketone metabolic process regulation of lipid metabolic process negative regulation of biological process regulation of primary metabolic process regulation of fatty acid oxidation regulation of small molecule metabolic process negative regulation of cellular process regulation of biological process negative regulation of fatty acid metabolic process negative regulation of metabolic process biological regulation regulation of ketone metabolic process regulation of fatty acid metabolic process regulation of metabolic process negative regulation of lipid metabolic process developmental process epithelium development cellular developmental process cell differentiation anatomical structure development tissue development epithelial cell differentiation regulation of cholesterol metabolic process sterol metabolic process steroid metabolic process regulation of steroid metabolic process cholesterol metabolic process alcohol metabolic process secondary alcohol metabolic process multicellular organismal process multicellular organismal-level homeostasis homeostatic process temperature homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase lipid biosynthetic process organic acid biosynthetic process negative regulation of lipid biosynthetic process carboxylic acid biosynthetic process negative regulation of fatty acid biosynthetic process regulation of biosynthetic process monocarboxylic acid biosynthetic process small molecule biosynthetic process fatty acid biosynthetic process biosynthetic process negative regulation of biosynthetic process regulation of fatty acid biosynthetic process regulation of lipid biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane nucleus membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen membraneless organelle nuclear lumen nucleoplasm nucleoid mitochondrial matrix mitochondrial nucleoid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A]	IPR036250	Acyl-CoA dehydrogenase-like, C-terminal	Homologous Superfamily
A [auth B], B [auth A]	IPR037069	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR009100	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR009075	Acyl-CoA dehydrogenase/oxidase, C-terminal	Domain
A [auth B], B [auth A]	IPR006089	Acyl-CoA dehydrogenase, conserved site	Conserved Site
A [auth B], B [auth A]	IPR013786	Acyl-CoA dehydrogenase/oxidase, N-terminal	Domain
A [auth B], B [auth A]	IPR006091	Acyl-CoA dehydrogenase/oxidase, middle domain	Domain
A [auth B], B [auth A]	IPR046373	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR049448	ACAD9/ACADV-like, C-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.