Annotations: 8C9B

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth S]	SCOP2B Superfamily	Ribosomal protein L22	8096336	3001078	SCOP2B (2022-06-29)
E [auth U]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8096358	3000334	SCOP2B (2022-06-29)
F [auth Y]	SCOP2B Superfamily	Ribosomal protein L29 (L29p)	8096370	3000713	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth 2]	PF00468	e8c9b21	A: extended segments	X: 50S ribosomal protein L34 (From Topology)	H: 50S ribosomal protein L34 (From Topology)	T: 50S ribosomal protein L34	F: PF00468	ECOD (1.6)
C [auth E]	PF00573	e8c9bE1	A: a/b three-layered sandwiches	X: Ribosomal protein L4 (From Topology)	H: Ribosomal protein L4 (From Topology)	T: Ribosomal protein L4	F: PF00573	ECOD (1.6)
D [auth S]	PF00237	e8c9bS1	A: a+b two layers	X: Enolase-N/ribosomal protein	H: Ribosomal protein L22 (From Topology)	T: Ribosomal protein L22	F: PF00237	ECOD (1.6)
E [auth U]	PF00467,PF17136	e8c9bU1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00467,PF17136	ECOD (1.6)
F [auth Y]	PF00831	e8c9bY1	A: alpha bundles	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p) (From Topology)	T: Ribosomal protein L29 (L29p)	F: PF00831	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth 2]	PF00468	Ribosomal protein L34 (Ribosomal_L34)	Ribosomal protein L34	-	Family
C [auth E]	PF00573	Ribosomal protein L4/L1 family (Ribosomal_L4)	Ribosomal protein L4/L1 family	-	Family
D [auth S]	PF00237	Ribosomal protein L22p/L17e (Ribosomal_L22)	Ribosomal protein L22p/L17e	This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.	Domain
E [auth U]	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)	Ribosomal proteins 50S L24/mitochondrial 39S L24	-	Family
E [auth U]	PF00467	KOW motif (KOW)	KOW motif	-	Family
F [auth Y]	PF00831	Ribosomal L29 protein (Ribosomal_L29)	Ribosomal L29 protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	23S rRNA	-	-	-
B [auth 2]	50S ribosomal protein L34	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
C [auth E]	50S ribosomal protein L4	enzyme regulator activity molecular function inhibitor activity molecular function regulator activity nuclease inhibitor activity enzyme inhibitor activity endoribonuclease inhibitor activity ribonuclease inhibitor activity DNA binding binding organic cyclic compound binding nucleic acid binding transcription regulator activity RNA-binding transcription regulator activity RNA binding enzyme regulator activity molecular function inhibitor activity molecular function regulator activity nuclease inhibitor activity enzyme inhibitor activity endoribonuclease inhibitor activity ribonuclease inhibitor activity DNA binding binding organic cyclic compound binding nucleic acid binding transcription regulator activity RNA-binding transcription regulator activity RNA binding rRNA binding mRNA 5'-UTR binding mRNA binding translation regulator activity translation repressor activity structural molecule activity structural constituent of ribosome	regulation of cellular process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription regulation of RNA metabolic process organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription regulation of biological process cellular metabolic process regulation of cellular process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription regulation of RNA metabolic process organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription regulation of biological process cellular metabolic process negative regulation of metabolic process primary metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process organic substance metabolic process negative regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process negative regulation of biosynthetic process cellular process organonitrogen compound biosynthetic process post-transcriptional regulation of gene expression negative regulation of translation protein metabolic process negative regulation of protein metabolic process organonitrogen compound metabolic process regulation of protein metabolic process translation negative regulation of gene expression negative regulation of cytoplasmic translation regulation of translation cytoplasmic translation regulation of cytoplasmic translation response to stimulus response to chemical response to antibiotic DNA-templated transcription termination protein-containing complex disassembly positive regulation of macromolecule biosynthetic process regulation of protein-containing complex disassembly positive regulation of metabolic process positive regulation of macromolecule metabolic process cellular component disassembly positive regulation of nucleobase-containing compound metabolic process positive regulation of RNA metabolic process regulation of termination of DNA-templated transcription positive regulation of cellular component organization regulation of cellular component organization positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of cellular metabolic process transcriptional attenuation positive regulation of termination of DNA-templated transcription cellular component organization positive regulation of biosynthetic process cellular component organization or biogenesis positive regulation of protein-containing complex disassembly positive regulation of cellular process protein-containing complex organization positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process ribonucleoprotein complex biogenesis organelle assembly non-membrane-bounded organelle assembly cellular component biogenesis ribosome biogenesis organelle organization cellular component assembly ribosome assembly	protein-containing complex intracellular anatomical structure cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome large ribosomal subunit non-membrane-bounded organelle cytoplasm cytosol cytosolic large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome large ribosomal subunit non-membrane-bounded organelle cytoplasm cytosol cytosolic large ribosomal subunit cytosolic ribosome
D [auth S]	50S ribosomal protein L22	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly assembly of large subunit precursor of preribosome protein-containing complex assembly ribosomal large subunit assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly assembly of large subunit precursor of preribosome protein-containing complex assembly ribosomal large subunit assembly cellular process cellular component organization or biogenesis ribosome assembly organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process protein metabolic process macromolecule metabolic process response to stimulus response to chemical response to antibiotic cytosolic ribosome assembly	protein-containing complex intracellular anatomical structure cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome large ribosomal subunit non-membrane-bounded organelle cytoplasm cytosol cytosolic large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome large ribosomal subunit non-membrane-bounded organelle cytoplasm cytosol cytosolic large ribosomal subunit cytosolic ribosome
E [auth U]	50S ribosomal protein L24	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome large ribosomal subunit intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome large ribosomal subunit non-membrane-bounded organelle
F [auth Y]	50S ribosomal protein L29	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth 2]	IPR020939	Large ribosomal subunit protein bL34, conserved site	Conserved Site
B [auth 2]	IPR000271	Large ribosomal subunit protein bL34	Family
C [auth E]	IPR013005	Large ribosomal subunit protein uL4-like	Family
C [auth E]	IPR002136	Large ribosomal subunit protein uL4	Family
C [auth E]	IPR023574	Large ribosomal subunit protein uL4 domain superfamily	Homologous Superfamily
D [auth S]	IPR047867	Large ribosomal subunit protein uL22, bacterial/organelle-type	Family
D [auth S]	IPR036394	Ribosomal protein uL22 superfamily	Homologous Superfamily
D [auth S]	IPR001063	Large ribosomal subunit protein uL22	Family
D [auth S]	IPR018260	Large ribosomal subunit protein uL22, conserved site	Conserved Site
D [auth S]	IPR005727	Large ribosomal subunit protein uL22, bacterial/chloroplast-type	Family
E [auth U]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
E [auth U]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
E [auth U]	IPR003256	Large ribosomal subunit protein uL24	Family
E [auth U]	IPR041988	Large ribosomal subunit protein uL24, KOW domain	Domain
E [auth U]	IPR005824	KOW	Domain
E [auth U]	IPR005825	Large ribosomal subunit protein uL24, conserved site	Conserved Site
F [auth Y]	IPR001854	Large ribosomal subunit protein uL29	Family
F [auth Y]	IPR036049	Large ribosomal subunit protein uL29 superfamily	Homologous Superfamily
F [auth Y]	IPR018254	Large ribosomal subunit protein uL29, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.