8C8T
cryo-EM structure of BG505 SOSIP.664 HIV-1 Env trimer in complex with bNAbs EPTC112 and 3BNC117
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00516 | e8c8tA1 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: PF00516 | ECOD (1.6) |
A | PF00516 | e8c8tA2 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: PF00516 | ECOD (1.6) |
A | PF00516 | e8c8tA3 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: PF00516 | ECOD (1.6) |
D [auth F] | PF00516 | e8c8tF1 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: PF00516 | ECOD (1.6) |
D [auth F] | PF00516 | e8c8tF3 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: PF00516 | ECOD (1.6) |
D [auth F] | PF00516 | e8c8tF2 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: PF00516 | ECOD (1.6) |
E [auth G] | PF00516 | e8c8tG3 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: PF00516 | ECOD (1.6) |
E [auth G] | PF00516 | e8c8tG2 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: PF00516 | ECOD (1.6) |
E [auth G] | PF00516 | e8c8tG1 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: PF00516 | ECOD (1.6) |
B | PF00517 | e8c8tB1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: PF00517 | ECOD (1.6) |
G [auth I] | PF00517 | e8c8tI1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: PF00517 | ECOD (1.6) |
H [auth J] | PF00517 | e8c8tJ1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: PF00517 | ECOD (1.6) |
C | PF07686 | e8c8tC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F [auth H] | PF07686 | e8c8tH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
I [auth R] | PF07686 | e8c8tR1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
J [auth S] | PF07686 | e8c8tS1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
K [auth T] | PF07686 | e8c8tT1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
L [auth U] | PF07686 | e8c8tU1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
M [auth D] | PF07686 | e8c8tD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
N [auth K] | PF07686 | e8c8tK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
K [auth T], L [auth U] | Light Chain | IGKV1 | Kappa | envelope glycoprotein gp160 | SAbDab (2024-05-10) |
M [auth D], N [auth K] | Light Chain | IGLV2 | Lambda | envelope glycoprotein gp160 | SAbDab (2024-05-10) |
Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage
Chain | Name | Target | Provenance Source |
---|---|---|---|
I [auth R], J [auth S] | Lafuvitug | HIV-1 gp120, HIV-1 gp120 CD4bs | Therapeutic SAbDab (2024-05-10) |
K [auth T], L [auth U] | Lafuvitug | HIV-1 gp120, HIV-1 gp120 CD4bs | Therapeutic SAbDab (2024-05-10) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth F], E [auth G] | PF00516 | Envelope glycoprotein GP120 (GP120) | Envelope glycoprotein GP120 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth F], E [auth G] | IPR000777 | Human immunodeficiency virus 1, envelope glycoprotein Gp120 | Domain |
A, D [auth F], E [auth G] | IPR036377 | Gp120 core superfamily | Homologous Superfamily |
A, D [auth F], E [auth G] | IPR000328 | Retroviral envelope protein GP41-like | Domain |
A, D [auth F], E [auth G] | IPR037527 | Envelope glycoprotein Gp160 | Family |