8C29 | pdb_00008c29

Cryo-EM structure of photosystem II C2S2 supercomplex from Norway spruce (Picea abies) at 2.8 Angstrom resolution

External Resource: Annotation


Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.85.10 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M domain 1CATH (utative)
X [auth a]1.20.85.10 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M domain 1CATH (utative)
B3.10.680.10 Alpha Beta Roll Photosystem II CP47 reaction center protein Photosystem II CP47 reaction center proteinCATH (utative)
Y [auth b]3.10.680.10 Alpha Beta Roll Photosystem II CP47 reaction center protein Photosystem II CP47 reaction center proteinCATH (utative)
AA [auth d]1.20.85.10 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M domain 1CATH (utative)
D1.20.85.10 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M domain 1CATH (utative)
TA [auth z]1.10.287.740 Mainly Alpha Orthogonal Bundle Helix Hairpins Photosystem II PsbZ, reaction centreCATH (utative)
W [auth Z]1.10.287.740 Mainly Alpha Orthogonal Bundle Helix Hairpins Photosystem II PsbZ, reaction centreCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
X [auth a]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
C,
Z [auth c]		PF00421Photosystem II protein (PSII)Photosystem II protein- Family
AA [auth d],
D		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
BA [auth e],
E		PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
EA [auth h],
H		PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
FA [auth i],
I		PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
KA [auth o],
N [auth O]		PF01716Manganese-stabilising protein / photosystem II polypeptide (MSP)Manganese-stabilising protein / photosystem II polypeptide- Family
LA [auth r],
O [auth R]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
NA [auth t],
Q [auth T]		PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
RA [auth x],
U [auth X]		PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
TA [auth z],
W [auth Z]		PF01737YCF9 (Ycf9)YCF9- Family
MA [auth s],
P [auth S]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
X [auth a]		Photosystem II protein D1
B,
Y [auth b]		Photosystem II CP47 reaction center protein
C,
Z [auth c]		Photosystem II CP43 reaction center protein
AA [auth d],
D		Photosystem II D2 protein
BA [auth e],
E		Cytochrome b559 subunit alpha
CA [auth f],
F		Cytochrome b559 subunit beta
Chlorophyll a-b binding protein, chloroplastic
EA [auth h],
H		Photosystem II reaction center protein H
FA [auth i],
I		Photosystem II reaction center protein I-
GA [auth k],
J [auth K]		Photosystem II reaction center protein K-
HA [auth l],
K [auth L]		Photosystem II reaction center protein L-
IA [auth m],
L [auth M]		Photosystem II reaction center protein M-
KA [auth o],
N [auth O]		Oxygen-evolving enhancer protein 1, chloroplastic
LA [auth r],
O [auth R]		Chlorophyll a-b binding protein, chloroplastic
NA [auth t],
Q [auth T]		Photosystem II reaction center protein T-
OA [auth u],
R [auth U]		Photosystem II 5 kDa protein, chloroplastic- - -
PA [auth v],
S [auth V]		Photosystem II reaction center protein Ycf12-
QA [auth w],
T [auth W]		PSII 6.1 kDa protein-
RA [auth x],
U [auth X]		Photosystem II PsbX-
TA [auth z],
W [auth Z]		Photosystem II reaction center protein Z-
MA [auth s],
P [auth S]		Chlorophyll a-b binding protein, chloroplastic

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
X [auth a]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
X [auth a]		IPR005867Photosystem II protein D1Family
A,
X [auth a]		IPR000484Photosynthetic reaction centre, L/MFamily
A,
X [auth a]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A,
X [auth a]		IPR055266Photosystem II protein D1/D2Family
B,
Y [auth b]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
Y [auth b]		IPR000932Photosystem antenna protein-likeFamily
B,
Y [auth b]		IPR017486Photosystem II CP47 reaction centre proteinFamily
C,
Z [auth c]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C,
Z [auth c]		IPR000932Photosystem antenna protein-likeFamily
C,
Z [auth c]		IPR005869Photosystem II CP43 reaction centre proteinFamily
C,
Z [auth c]		IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
AA [auth d],
D		IPR005868Photosystem II D2Family
AA [auth d],
D		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
AA [auth d],
D		IPR000484Photosynthetic reaction centre, L/MFamily
AA [auth d],
D		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
AA [auth d],
D		IPR055266Photosystem II protein D1/D2Family
BA [auth e],
E		IPR013081Photosystem II cytochrome b559, N-terminalDomain
BA [auth e],
E		IPR006217Photosystem II cytochrome b559, alpha subunitFamily
BA [auth e],
E		IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
BA [auth e],
E		IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
BA [auth e],
E		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
CA [auth f],
F		IPR006241Photosystem II cytochrome b559, beta subunitFamily
CA [auth f],
F		IPR013081Photosystem II cytochrome b559, N-terminalDomain
CA [auth f],
F		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
EA [auth h],
H		IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
EA [auth h],
H		IPR001056Photosystem II reaction centre protein HFamily
FA [auth i],
I		IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
FA [auth i],
I		IPR003686Photosystem II PsbIFamily
GA [auth k],
J [auth K]		IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
GA [auth k],
J [auth K]		IPR003687Photosystem II PsbKFamily
HA [auth l],
K [auth L]		IPR003372Photosystem II PsbLFamily
HA [auth l],
K [auth L]		IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
IA [auth m],
L [auth M]		IPR007826Photosystem II PsbMFamily
IA [auth m],
L [auth M]		IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
KA [auth o],
N [auth O]		IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
KA [auth o],
N [auth O]		IPR002628Photosystem II extrinsic protein OFamily
LA [auth r],
O [auth R]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
LA [auth r],
O [auth R]		IPR022796Chlorophyll A-B binding proteinFamily
NA [auth t],
Q [auth T]		IPR001743Photosystem II PsbTFamily
NA [auth t],
Q [auth T]		IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
OA [auth u],
R [auth U]		IPR040296Photosystem II 5kDa protein, chloroplasticFamily
PA [auth v],
S [auth V]		IPR010284Photosystem II reaction center protein Ycf12Family
QA [auth w],
T [auth W]		IPR009806Photosystem II PsbW, class 2Family
RA [auth x],
U [auth X]		IPR009518Photosystem II PsbXFamily
TA [auth z],
W [auth Z]		IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
TA [auth z],
W [auth Z]		IPR002644Photosystem II PsbZ, reaction centreFamily
MA [auth s],
P [auth S]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
MA [auth s],
P [auth S]		IPR022796Chlorophyll A-B binding proteinFamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
MemProtMDAnnotated as membrane protein by MemProtMD