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8C1L
Crystal structure of HNF4 alpha LBD in complexes with palmitic acid and GRIP-1 peptide
External Resource: Annotation
Domain Annotation: SCOP2 Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Domain Annotation: SCOP2 Classification
SCOP2 Database Homepage
Chains
Type
Family Name
Domain Identifier
Family Identifier
Provenance Source (Version)
A
SCOP2B Superfamily
Nuclear receptor ligand-binding domain
8038367
3001442
SCOP2B (2022-06-29)
B
SCOP2B Superfamily
Nuclear receptor ligand-binding domain
8038367
3001442
SCOP2B (2022-06-29)
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
,
B
Hepatocyte nuclear factor 4-alpha
DNA binding
sequence-specific DNA binding
sequence-specific double-stranded DNA binding
transcription cis-regulatory region binding
binding
double-stranded DNA binding
organic cyclic compound binding
nucleic acid binding
transcription regulatory region nucleic acid binding
DNA-binding transcription factor activity, RNA polymerase II-specific
transcription regulator activity
DNA-binding transcription factor activity
nuclear receptor activity
molecular transducer activity
DNA binding
sequence-specific DNA binding
sequence-specific double-stranded DNA binding
transcription cis-regulatory region binding
binding
double-stranded DNA binding
organic cyclic compound binding
nucleic acid binding
transcription regulatory region nucleic acid binding
DNA-binding transcription factor activity, RNA polymerase II-specific
transcription regulator activity
DNA-binding transcription factor activity
nuclear receptor activity
molecular transducer activity
ligand-activated transcription factor activity
signaling receptor activity
DNA-binding transcription activator activity, RNA polymerase II-specific
DNA-binding transcription activator activity
protein binding
signaling receptor binding
transcription factor binding
RNA polymerase II-specific DNA-binding transcription factor binding
DNA-binding transcription factor binding
RNA polymerase II transcription regulatory region sequence-specific DNA binding
cis-regulatory region sequence-specific DNA binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
fatty acid binding
organic acid binding
ion binding
anion binding
lipid binding
carboxylic acid binding
monocarboxylic acid binding
small molecule binding
protein-containing complex binding
chromatin binding
identical protein binding
protein homodimerization activity
protein dimerization activity
cation binding
transition metal ion binding
zinc ion binding
metal ion binding
Less
multicellular organismal process
regulation of body fluid levels
wound healing
response to stimulus
hemostasis
biological regulation
blood coagulation
response to stress
coagulation
regulation of biological quality
response to wounding
phospholipid homeostasis
chemical homeostasis
homeostatic process
multicellular organismal process
regulation of body fluid levels
wound healing
response to stimulus
hemostasis
biological regulation
blood coagulation
response to stress
coagulation
regulation of biological quality
response to wounding
phospholipid homeostasis
chemical homeostasis
homeostatic process
lipid homeostasis
triglyceride homeostasis
acylglycerol homeostasis
regulation of biological process
regulation of growth
regulation of cellular component organization
regulation of cellular process
negative regulation of biological process
growth
negative regulation of cell growth
regulation of cell growth
cell growth
cellular component organization
negative regulation of growth
negative regulation of cellular process
cellular process
cellular component organization or biogenesis
developmental process
regulation of embryonic development
regulation of multicellular organismal development
regulation of gastrulation
regulation of developmental process
embryonic morphogenesis
embryo development
gastrulation
multicellular organism development
anatomical structure morphogenesis
anatomical structure development
regulation of multicellular organismal process
regulation of anatomical structure morphogenesis
protein localization
regulation of localization
establishment of protein localization
nitrogen compound transport
cell communication
localization
cellular macromolecule localization
regulation of peptide hormone secretion
regulation of hormone levels
organic substance transport
establishment of protein localization to extracellular region
protein secretion
establishment of localization
regulation of protein secretion
regulation of secretion
cellular localization
regulation of hormone secretion
regulation of protein localization
regulation of peptide secretion
transport
signaling
hormone secretion
protein localization to extracellular region
peptide secretion
secretion by cell
regulation of secretion by cell
amide transport
signal release
regulation of signaling
secretion
regulation of transport
regulation of peptide transport
regulation of establishment of protein localization
cell-cell signaling
export from cell
regulation of protein transport
peptide transport
protein transport
regulation of cellular localization
regulation of insulin secretion
peptide hormone secretion
macromolecule localization
hormone transport
regulation of cell communication
insulin secretion
cellular response to stimulus
cellular response to nitrogen compound
response to organic substance
response to peptide hormone
regulation of signal transduction
cellular response to growth hormone stimulus
cell surface receptor protein tyrosine kinase signaling pathway
cellular response to endogenous stimulus
regulation of growth hormone receptor signaling pathway
response to hormone
signal transduction
cellular response to organic substance
enzyme-linked receptor protein signaling pathway
cellular response to hormone stimulus
growth hormone receptor signaling pathway
cell surface receptor signaling pathway
response to endogenous stimulus
response to organonitrogen compound
cellular response to peptide hormone stimulus
response to oxygen-containing compound
response to nitrogen compound
cellular response to oxygen-containing compound
response to growth hormone
cellular response to chemical stimulus
cellular response to organonitrogen compound
regulation of response to stimulus
response to chemical
cellular biosynthetic process
organic substance metabolic process
signal transduction involved in regulation of gene expression
organic substance biosynthetic process
regulation of biosynthetic process
cellular metabolic process
regulation of cellular metabolic process
regulation of macromolecule metabolic process
gene expression
macromolecule biosynthetic process
regulation of cellular biosynthetic process
regulation of gene expression
biosynthetic process
regulation of macromolecule biosynthetic process
metabolic process
macromolecule metabolic process
regulation of metabolic process
positive regulation of macromolecule biosynthetic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
positive regulation of metabolic process
DNA-templated transcription
regulation of RNA metabolic process
transcription by RNA polymerase II
positive regulation of macromolecule metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of transcription by RNA polymerase II
positive regulation of nucleobase-containing compound metabolic process
primary metabolic process
positive regulation of transcription by RNA polymerase II
positive regulation of RNA metabolic process
organic cyclic compound metabolic process
organic cyclic compound biosynthetic process
regulation of DNA-templated transcription
positive regulation of DNA-templated transcription
positive regulation of biological process
RNA metabolic process
positive regulation of cellular metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
positive regulation of biosynthetic process
positive regulation of cellular process
regulation of RNA biosynthetic process
nucleobase-containing compound biosynthetic process
nucleic acid metabolic process
positive regulation of RNA biosynthetic process
positive regulation of cellular biosynthetic process
glucose homeostasis
carbohydrate homeostasis
negative regulation of cellular metabolic process
negative regulation of RNA biosynthetic process
negative regulation of nucleobase-containing compound metabolic process
negative regulation of DNA-templated transcription
negative regulation of metabolic process
negative regulation of cellular biosynthetic process
negative regulation of macromolecule biosynthetic process
negative regulation of RNA metabolic process
negative regulation of macromolecule metabolic process
negative regulation of biosynthetic process
cellular developmental process
cell differentiation
regulation of lipid metabolic process
lipid metabolic process
rhythmic process
circadian rhythm
regulation of circadian rhythm
ornithine metabolic process
organonitrogen compound metabolic process
oxoacid metabolic process
carboxylic acid metabolic process
amino acid metabolic process
organic acid metabolic process
alpha-amino acid metabolic process
non-proteinogenic amino acid metabolic process
small molecule metabolic process
sterol homeostasis
cholesterol homeostasis
response to hexose
response to monosaccharide
response to carbohydrate
response to glucose
cellular response to xenobiotic stimulus
xenobiotic metabolic process
response to xenobiotic stimulus
negative regulation of cell population proliferation
cell population proliferation
regulation of cell population proliferation
reproductive process
sex differentiation
developmental process involved in reproduction
Less
intracellular anatomical structure
cytoplasm
cellular anatomical entity
intracellular organelle
protein-containing complex
protein-DNA complex
organelle
intracellular non-membrane-bounded organelle
chromatin
chromosome
non-membrane-bounded organelle
membrane-bounded organelle
nucleus
membrane-enclosed lumen
intracellular anatomical structure
cytoplasm
cellular anatomical entity
intracellular organelle
protein-containing complex
protein-DNA complex
organelle
intracellular non-membrane-bounded organelle
chromatin
chromosome
non-membrane-bounded organelle
membrane-bounded organelle
nucleus
membrane-enclosed lumen
intracellular membrane-bounded organelle
intracellular organelle lumen
nucleoplasm
organelle lumen
nuclear lumen
Less
C [auth D]
,
D [auth E]
Nuclear receptor coactivator 2
protein binding
binding
protein domain specific binding
DNA binding
sequence-specific DNA binding
double-stranded DNA binding
nucleic acid binding
RNA polymerase II transcription regulatory region sequence-specific DNA binding
cis-regulatory region sequence-specific DNA binding
sequence-specific double-stranded DNA binding
transcription cis-regulatory region binding
organic cyclic compound binding
transcription regulatory region nucleic acid binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
protein binding
binding
protein domain specific binding
DNA binding
sequence-specific DNA binding
double-stranded DNA binding
nucleic acid binding
RNA polymerase II transcription regulatory region sequence-specific DNA binding
cis-regulatory region sequence-specific DNA binding
sequence-specific double-stranded DNA binding
transcription cis-regulatory region binding
organic cyclic compound binding
transcription regulatory region nucleic acid binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
protein-containing complex binding
chromatin binding
transcription coactivator activity
transcription regulator activity
transcription coregulator activity
protein-macromolecule adaptor activity
molecular adaptor activity
transcription factor binding
RNA polymerase II-specific DNA-binding transcription factor binding
nuclear receptor binding
DNA-binding transcription factor binding
RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
intronic transcription regulatory region sequence-specific DNA binding
nuclear receptor coactivator activity
protein dimerization activity
signaling receptor binding
aryl hydrocarbon receptor binding
Less
regulation of biological process
organic substance metabolic process
regulation of lipid metabolic process
biological regulation
primary metabolic process
metabolic process
regulation of metabolic process
lipid metabolic process
regulation of primary metabolic process
developmental process
multicellular organismal process
regulation of developmental process
connective tissue development
adipose tissue development
regulation of biological process
organic substance metabolic process
regulation of lipid metabolic process
biological regulation
primary metabolic process
metabolic process
regulation of metabolic process
lipid metabolic process
regulation of primary metabolic process
developmental process
multicellular organismal process
regulation of developmental process
connective tissue development
adipose tissue development
positive regulation of adipose tissue development
animal organ development
positive regulation of biological process
tissue development
positive regulation of developmental process
regulation of adipose tissue development
anatomical structure development
positive regulation of multicellular organismal process
regulation of multicellular organismal process
response to organic substance
response to ketone
response to lipid
response to stimulus
response to endogenous stimulus
response to progesterone
response to oxygen-containing compound
response to hormone
response to steroid hormone
response to chemical
response to organic cyclic compound
cellular response to stimulus
cellular response to endogenous stimulus
cellular response to chemical stimulus
cellular process
cellular response to organic substance
cellular response to hormone stimulus
regulation of cellular process
cellular biosynthetic process
organic substance biosynthetic process
regulation of biosynthetic process
rhythmic process
circadian regulation of gene expression
cellular metabolic process
circadian rhythm
regulation of cellular metabolic process
regulation of macromolecule metabolic process
gene expression
macromolecule biosynthetic process
regulation of cellular biosynthetic process
regulation of gene expression
biosynthetic process
regulation of macromolecule biosynthetic process
macromolecule metabolic process
RNA metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
DNA-templated transcription
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
nucleobase-containing compound biosynthetic process
nucleic acid metabolic process
organic cyclic compound metabolic process
organic cyclic compound biosynthetic process
regulation of DNA-templated transcription
intracellular receptor signaling pathway
signaling
cell communication
peroxisome proliferator activated receptor signaling pathway
signal transduction
mRNA transcription by RNA polymerase II
mRNA transcription
transcription by RNA polymerase II
mRNA metabolic process
behavior
circadian behavior
locomotory behavior
rhythmic behavior
locomotor rhythm
response to Thyroglobulin triiodothyronine
cellular response to Thyroglobulin triiodothyronine
negative regulation of biological process
negative regulation of cellular metabolic process
negative regulation of RNA biosynthetic process
negative regulation of nucleobase-containing compound metabolic process
regulation of transcription by RNA polymerase II
negative regulation of DNA-templated transcription
negative regulation of transcription by RNA polymerase II
negative regulation of metabolic process
negative regulation of cellular biosynthetic process
negative regulation of macromolecule biosynthetic process
negative regulation of RNA metabolic process
negative regulation of cellular process
negative regulation of macromolecule metabolic process
negative regulation of biosynthetic process
cellular response to nitrogen compound
response to peptide hormone
regulation of cellular response to insulin stimulus
response to organonitrogen compound
cellular response to peptide hormone stimulus
response to nitrogen compound
cellular response to oxygen-containing compound
cellular response to organonitrogen compound
regulation of response to stimulus
response to insulin
cellular response to insulin stimulus
positive regulation of macromolecule biosynthetic process
positive regulation of metabolic process
positive regulation of macromolecule metabolic process
positive regulation of nucleobase-containing compound metabolic process
positive regulation of transcription by RNA polymerase II
positive regulation of RNA metabolic process
positive regulation of DNA-templated transcription
positive regulation of cellular metabolic process
positive regulation of biosynthetic process
positive regulation of cellular process
positive regulation of RNA biosynthetic process
positive regulation of cellular biosynthetic process
monosaccharide metabolic process
carbohydrate metabolic process
hexose metabolic process
regulation of small molecule metabolic process
small molecule metabolic process
regulation of carbohydrate metabolic process
regulation of glucose metabolic process
glucose metabolic process
Less
RNA polymerase II transcription regulator complex
membrane-bounded organelle
protein-containing complex
intracellular anatomical structure
nucleus
nuclear protein-containing complex
transcription regulator complex
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle
organelle
cytoplasm
membrane-enclosed lumen
intracellular organelle lumen
RNA polymerase II transcription regulator complex
membrane-bounded organelle
protein-containing complex
intracellular anatomical structure
nucleus
nuclear protein-containing complex
transcription regulator complex
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle
organelle
cytoplasm
membrane-enclosed lumen
intracellular organelle lumen
nucleoplasm
organelle lumen
nuclear lumen
protein-DNA complex
intracellular non-membrane-bounded organelle
chromatin
chromosome
non-membrane-bounded organelle
nuclear body
Less
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
,
B
IPR001628
Zinc finger, nuclear hormone receptor-type
Domain
A
,
B
IPR013088
Zinc finger, NHR/GATA-type
Homologous Superfamily
A
,
B
IPR001723
Nuclear hormone receptor
Family
A
,
B
IPR049635
Hepatocyte nuclear factor 4, ligand-binding domain
Domain
A
,
B
IPR049636
Hepatocyte nuclear factor 4-like, DNA-binding domain
Domain
A
,
B
IPR000536
Nuclear hormone receptor, ligand-binding domain
Domain
A
,
B
IPR035500
Nuclear hormone receptor-like domain superfamily
Homologous Superfamily
C [auth D]
,
D [auth E]
IPR010011
Nuclear receptor coactivator, DUF1518
Domain
C [auth D]
,
D [auth E]
IPR009110
Nuclear receptor coactivator, interlocking
Homologous Superfamily
C [auth D]
,
D [auth E]
IPR037077
Nuclear receptor coactivator, Ncoa-type, interlocking domain superfamily
Homologous Superfamily
C [auth D]
,
D [auth E]
IPR017426
Nuclear receptor coactivator
Family
C [auth D]
,
D [auth E]
IPR014935
Nuclear receptor coactivator, receptor-binding domain
Domain
C [auth D]
,
D [auth E]
IPR013767
PAS fold
Domain
C [auth D]
,
D [auth E]
IPR000014
PAS domain
Domain
C [auth D]
,
D [auth E]
IPR011598
Myc-type, basic helix-loop-helix (bHLH) domain
Domain
C [auth D]
,
D [auth E]
IPR014920
Nuclear receptor coactivator, Ncoa-type, interlocking
Domain
C [auth D]
,
D [auth E]
IPR035965
PAS domain superfamily
Homologous Superfamily
C [auth D]
,
D [auth E]
IPR028822
Nuclear receptor coactivator 2, basic helix-loop-helix
Domain
C [auth D]
,
D [auth E]
IPR032565
Nuclear receptor coactivator 2/3, DUF4927
Domain
C [auth D]
,
D [auth E]
IPR036638
Helix-loop-helix DNA-binding domain superfamily
Homologous Superfamily
Pharos: Disease Associations
Pharos Homepage Annotation
Chains
Drug Target  
Associated Disease
A
,
B
Pharos
: 
P41235
maturity-onset diabetes of the young
ulcerative colitis
Fanconi renotubular syndrome 4 with maturity-onset diabetes of the young
type 2 diabetes mellitus
maturity-onset diabetes of the young type 1
renal cysts and diabetes syndrome
hyperinsulinism due to HNF4A deficiency
hyperinsulinemic hypoglycemia
metabolic syndrome X
acquired metabolic disease
Diabetes Mellitus, Non-Insulin-Dependent
hyperinsulinism
large cell medulloblastoma
pancreatic ductal adenocarcinoma
cancer
maturity-onset diabetes of the young
ulcerative colitis
Fanconi renotubular syndrome 4 with maturity-onset diabetes of the young
type 2 diabetes mellitus
maturity-onset diabetes of the young type 1
renal cysts and diabetes syndrome
hyperinsulinism due to HNF4A deficiency
hyperinsulinemic hypoglycemia
metabolic syndrome X
acquired metabolic disease
Diabetes Mellitus, Non-Insulin-Dependent
hyperinsulinism
large cell medulloblastoma
pancreatic ductal adenocarcinoma
cancer
gallbladder disease
intellectual disability
liver disease
pancreatic intraductal papillary-mucinous neoplasm
diabetes mellitus
inborn errors of metabolism
intestinal disease
malignant glioma
Less
C [auth D]
,
D [auth E]
Pharos
: 
Q15596
breast carcinoma
prostate cancer
psoriasis
ulcerative colitis
adenoma
endometriosis
interstitial cystitis
Mammary Neoplasms
osteosarcoma
testicular cancer
atypical teratoid rhabdoid tumor
Crohn disease
Gaucher disease
large cell medulloblastoma
pancreatic intraductal papillary-mucinous neoplasm
breast carcinoma
prostate cancer
psoriasis
ulcerative colitis
adenoma
endometriosis
interstitial cystitis
Mammary Neoplasms
osteosarcoma
testicular cancer
atypical teratoid rhabdoid tumor
Crohn disease
Gaucher disease
large cell medulloblastoma
pancreatic intraductal papillary-mucinous neoplasm
testicular germ cell tumor
breast cancer
endogenous depression
glioblastoma
medulloblastoma
plasma cell myeloma
Less
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