Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth P]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8061280 3001397 SCOP2B (2022-06-29)
K [auth Q]SCOP2B SuperfamilyRibosomal S3Ae-like8053211 3002166 SCOP2B (2022-06-29)
M [auth S]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052758 3001473 SCOP2B (2022-06-29)
M [auth S]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052760 3000334 SCOP2B (2022-06-29)
M [auth S]SCOP2B SuperfamilyNucleic acid-binding proteins8052759 3000135 SCOP2B (2022-06-29)
N [auth T]SCOP2B SuperfamilyGS N-terminal domain-like8053173 3000408 SCOP2B (2022-06-29)
P [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8053083 3000433 SCOP2B (2022-06-29)
R [auth X]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052736 3002138 SCOP2B (2022-06-29)
R [auth X]SCOP2B SuperfamilyNucleic acid-binding proteins8052738 3000135 SCOP2B (2022-06-29)
S [auth Y]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052974 3001284 SCOP2B (2022-06-29)
S [auth Y]SCOP2B SuperfamilyHomeodomain-like8052973 3000001 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRibosomal protein S78065993 3000799 SCOP2B (2022-06-29)
T [auth Z]SCOP2B SuperfamilyTranslational machinery components8095805 3000571 SCOP2B (2022-06-29)
U [auth a]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053136 3000068 SCOP2B (2022-06-29)
V [auth b]SCOP2B SuperfamilyRibosomal protein S88096922 3000709 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyRibosomal protein S198086076 3000686 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8103366 3000100 SCOP2B (2022-06-29)
F [auth H]SCOP2B SuperfamilyS13-like H2TH domain8098450 3000053 SCOP2B (2022-06-29)
H [auth K]SCOP2B SuperfamilyWinged helix DNA-binding domain8059235 3000034 SCOP2B (2022-06-29)
I [auth L]SCOP2B SuperfamilyNucleic acid-binding proteins8063430 3000135 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth P]PF00318e8c01P1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
K [auth Q]PF01015e8c01Q1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
K [auth Q]PF01015e8c01Q2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
L [auth R]PF03719e8c01R3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
L [auth R]PF00333e8c01R2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
L [auth R]PF00333e8c01R1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
M [auth S]PF00900e8c01S1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
M [auth S]PF00467,PF16121e8c01S3 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
M [auth S]PF00900,PF01479,PF08071e8c01S2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
N [auth T]PF01092e8c01T1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
O [auth U]PF01251e8c01U1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
P [auth V]PF01201e8c01V1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
Q [auth W]PF00163,PF01479e8c01W1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
R [auth X]PF00366,PF16205e8c01X1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
S [auth Y]PF08069e8c01Y2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
S [auth Y]PF00312e8c01Y1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
BPF00177e8c01B1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
T [auth Z]PF00411e8c01Z1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
U [auth a]PF01249e8c01a1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
V [auth b]PF00410e8c01b2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
V [auth b]PF00410e8c01b1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
W [auth c]PF00164e8c01c1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
X [auth d]PF01282e8c01d1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
Y [auth e]PF05291e8c01e1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF05291ECOD (1.6)
Z [auth f]PF01667e8c01f1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
AA [auth g]PF04758e8c01g1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
CA [auth p]PF17903e8c01p2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF17903ECOD (1.6)
CA [auth p]PF22891e8c01p1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF22891ECOD (1.6)
D [auth E]PF00203e8c01E1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
E [auth F]PF00380e8c01F1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
F [auth H]PF00416e8c01H1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
G [auth I]PF01090e8c01I1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
H [auth K]PF03297e8c01K1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
I [auth L]PF01200e8c01L1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth P]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
K [auth Q]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
L [auth R]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
L [auth R]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
M [auth S]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
M [auth S]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
M [auth S]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
M [auth S]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
M [auth S]PF00467KOW motif (KOW)KOW motif- Family
N [auth T]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
O [auth U]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
P [auth V]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
Q [auth W]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
Q [auth W]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
R [auth X]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
R [auth X]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
S [auth Y]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
S [auth Y]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
T [auth Z]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
U [auth a]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
V [auth b]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
W [auth c]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
X [auth d]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
Y [auth e]PF05291Bystin (Bystin)Bystin- Family
Z [auth f]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
AA [auth g]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
BA [auth o]PF08772Nin one binding (NOB1) Zn-ribbon like (NOB1_Zn_bind)Nin one binding (NOB1) Zn-ribbon likeThis domain corresponds to a zinc ribbon and is found on the RNA binding protein NOB1 (Nin one binding).Domain
BA [auth o]PF17146PIN domain of ribonuclease (PIN_6)PIN domain of ribonucleaseThis is a PIN domain found in eukaryotic ribonuclease Nob1 and archaeal ribonuclease VapC1 [1]. Budding yeast Nob1 is involved in proteasomal and 40S ribosomal subunit biogenesis [2]. VapC1 is a toxic component and a ribonuclease of a toxin-antitoxin ...This is a PIN domain found in eukaryotic ribonuclease Nob1 and archaeal ribonuclease VapC1 [1]. Budding yeast Nob1 is involved in proteasomal and 40S ribosomal subunit biogenesis [2]. VapC1 is a toxic component and a ribonuclease of a toxin-antitoxin (TA) module [3]. PIN domains are small protein domains identified by the presence of three strictly conserved acidic residues. Apart from these three residues, there is poor sequence conservation [4]. PIN domains are found in eukaryotes, eubacteria and archaea. In eukaryotes they are ribonucleases involved in nonsense mediated mRNA decay [5] and in processing of 18S ribosomal RNA [6]. In prokaryotes, they are the toxic components of toxin-antitoxin (TA) systems, their toxicity arising by virtue of their ribonuclease activity. The PIN domain TA systems are now called VapBC TAs(virulence associated proteins), where VapB is the inhibitor and VapC, the PIN-domain ribonuclease toxin [4].
Domain
CA [auth p]PF17903Krr1 KH1 domain (KH_8)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1].Domain
PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
DA [auth r]PF09202Rio2, N-terminal (Rio2_N)Rio2, N-terminalMembers of this family are found in Rio2, and are structurally homologous to the winged helix (wHTH) domain. They adopt a structure consisting of four alpha helices followed by two beta strands and a fifth alpha helix. The domain confers DNA binding ...Members of this family are found in Rio2, and are structurally homologous to the winged helix (wHTH) domain. They adopt a structure consisting of four alpha helices followed by two beta strands and a fifth alpha helix. The domain confers DNA binding properties to the protein, as per other winged helix domains [1].
Domain
EA [auth t]PF0495040S ribosome biogenesis protein Tsr1 and BMS1 C-terminal (RIBIOP_C)40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal- Family
D [auth E]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
E [auth F]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
F [auth H]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
G [auth I]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
H [auth K]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
I [auth L]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]18S rRNA precursor---
J [auth P]40S ribosomal protein S0-A
K [auth Q]40S ribosomal protein S1-A
L [auth R]40S ribosomal protein S2
M [auth S]40S ribosomal protein S4-A
N [auth T]40S ribosomal protein S6-A
O [auth U]40S ribosomal protein S7-A
P [auth V]40S ribosomal protein S8-A
Q [auth W]40S ribosomal protein S9-A
R [auth X]40S ribosomal protein S11-A
S [auth Y]40S ribosomal protein S13
40S ribosomal protein S5
T [auth Z]40S ribosomal protein S14-A
U [auth a]40S ribosomal protein S21-A
V [auth b]40S ribosomal protein S22-A
W [auth c]40S ribosomal protein S23-A
X [auth d]40S ribosomal protein S24-A
Y [auth e]Essential nuclear protein 1
Z [auth f]40S ribosomal protein S27-A
AA [auth g]40S ribosomal protein S30-A
BA [auth o]20S-pre-rRNA D-site endonuclease NOB1
CA [auth p]Pre-rRNA-processing protein PNO1
40S ribosomal protein S17-A
DA [auth r]Serine/threonine-protein kinase RIO2
EA [auth t]Ribosome biogenesis protein TSR1
D [auth E]40S ribosomal protein S15
E [auth F]40S ribosomal protein S16-A
F [auth H]40S ribosomal protein S18-A
G [auth I]40S ribosomal protein S19-A
H [auth K]40S ribosomal protein S25-A
I [auth L]40S ribosomal protein S28-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth P]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
J [auth P]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
J [auth P]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
J [auth P]IPR001865Small ribosomal subunit protein uS2Family
J [auth P]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
K [auth Q]IPR001593Small ribosomal subunit protein eS1Family
K [auth Q]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
K [auth Q]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
L [auth R]IPR000851Small ribosomal subunit protein uS5Family
L [auth R]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
L [auth R]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
L [auth R]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
L [auth R]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
L [auth R]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
L [auth R]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
M [auth S]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
M [auth S]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
M [auth S]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
M [auth S]IPR002942RNA-binding S4 domainDomain
M [auth S]IPR013845Small ribosomal subunit protein eS4, central regionDomain
M [auth S]IPR000876Small ribosomal subunit protein eS4Family
M [auth S]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
M [auth S]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
M [auth S]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
M [auth S]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
M [auth S]IPR005824KOWDomain
N [auth T]IPR014401Small ribosomal subunit protein eS6-likeFamily
N [auth T]IPR001377Small ribosomal subunit protein eS6Family
N [auth T]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
O [auth U]IPR000554Small ribosomal subunit protein eS7Family
O [auth U]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
P [auth V]IPR001047Small ribosomal subunit protein eS8Family
P [auth V]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
P [auth V]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
P [auth V]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
Q [auth W]IPR002942RNA-binding S4 domainDomain
Q [auth W]IPR022801Small ribosomal subunit protein uS4Family
Q [auth W]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
Q [auth W]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
Q [auth W]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
Q [auth W]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
R [auth X]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
R [auth X]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
R [auth X]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
R [auth X]IPR000266Small ribosomal subunit protein uS17Family
R [auth X]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
S [auth Y]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
S [auth Y]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
S [auth Y]IPR000589Small ribosomal subunit protein uS15Family
S [auth Y]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
IPR000235Small ribosomal subunit protein uS7Family
IPR023798Small ribosomal subunit protein uS7 domainDomain
IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
T [auth Z]IPR001971Small ribosomal subunit protein uS11Family
T [auth Z]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
T [auth Z]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
U [auth a]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
U [auth a]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
U [auth a]IPR001931Small ribosomal subunit protein eS21Family
V [auth b]IPR000630Small ribosomal subunit protein uS8Family
V [auth b]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
V [auth b]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
W [auth c]IPR006032Small ribosomal subunit protein uS12Family
W [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
W [auth c]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
X [auth d]IPR001976Small ribosomal subunit protein eS24Family
X [auth d]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
X [auth d]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
Y [auth e]IPR007955BystinFamily
Z [auth f]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
Z [auth f]IPR000592Small ribosomal subunit protein eS27Family
Z [auth f]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth g]IPR006846Small ribosomal subunit protein eS30Family
BA [auth o]IPR033411Ribonuclease, PIN domainDomain
BA [auth o]IPR017117Ribonuclease Nob1, eukaryoteFamily
BA [auth o]IPR039907RNA-binding protein NOB1Family
BA [auth o]IPR036283NOB1 zinc finger-like superfamilyHomologous Superfamily
BA [auth o]IPR014881Nin one binding (NOB1) Zn-ribbon-likeDomain
BA [auth o]IPR002716PIN domainDomain
CA [auth p]IPR041174KRR1 small subunit processome component, first KH domainDomain
CA [auth p]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
IPR001210Small ribosomal subunit protein eS17Family
IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
DA [auth r]IPR030484Serine/threonine-protein kinase Rio2Domain
DA [auth r]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
DA [auth r]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
DA [auth r]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
DA [auth r]IPR015285RIO2 kinase winged helix domain, N-terminalDomain
DA [auth r]IPR000687RIO kinaseDomain
EA [auth t]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
EA [auth t]IPR030387Bms1/Tsr1-type G domainDomain
EA [auth t]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
EA [auth t]IPR012948AARP2CNDomain
D [auth E]IPR002222Small ribosomal subunit protein uS19Family
D [auth E]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
D [auth E]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
D [auth E]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
E [auth F]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
E [auth F]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth F]IPR000754Small ribosomal subunit protein uS9Family
E [auth F]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
F [auth H]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
F [auth H]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
F [auth H]IPR001892Small ribosomal subunit protein uS13Family
F [auth H]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
G [auth I]IPR001266Small ribosomal subunit protein eS19Family
G [auth I]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
G [auth I]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
G [auth I]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
H [auth K]IPR004977Small ribosomal subunit protein eS25Family
H [auth K]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
I [auth L]IPR028626Ribosomal protein eS28 conserved siteConserved Site
I [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth L]IPR000289Small ribosomal subunit protein eS28Family