8BYL
Cryo-EM structure of SKP1-SKP2-CKS1 from the SCFSKP2 E3 ligase complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Skp1 dimerisation domain-like | 8038683 | 3000564 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | POZ domain | 8035033 | 3000894 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RNI-like | 8037339 | 3000990 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | F-box domain | 8038678 | 3000567 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cell cycle regulatory proteins | 8037340 | 3000311 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01466,PF03931 | e8bylA1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: PF01466,PF03931 | ECOD (1.6) |
B | F_UNCLASSIFIED | e8bylB2 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF12937 | e8bylB1 | A: alpha arrays | X: F-box domain (From Topology) | H: F-box domain (From Topology) | T: F-box domain | F: PF12937 | ECOD (1.6) |
C | PF01111 | e8bylC1 | A: a+b complex topology | X: Cell cycle regulatory proteins (From Topology) | H: Cell cycle regulatory proteins (From Topology) | T: Cell cycle regulatory proteins | F: PF01111 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01466 | Skp1 family, dimerisation domain (Skp1) | Skp1 family, dimerisation domain | - | Domain | |
PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain | |
PF12937 | F-box-like (F-box-like) | F-box-like | This is an F-box-like family. | Domain | |
PF01111 | Cyclin-dependent kinase regulatory subunit (CKS) | Cyclin-dependent kinase regulatory subunit | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016073 | SKP1 component, POZ domain | Domain | |
IPR001232 | S-phase kinase-associated protein 1-like | Family | |
IPR036296 | SKP1-like, dimerisation domain superfamily | Homologous Superfamily | |
IPR016072 | SKP1 component, dimerisation | Domain | |
IPR011333 | SKP1/BTB/POZ domain superfamily | Homologous Superfamily | |
IPR016897 | S-phase kinase-associated protein 1 | Family | |
IPR036047 | F-box-like domain superfamily | Homologous Superfamily | |
IPR001810 | F-box domain | Domain | |
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR006553 | Leucine-rich repeat, cysteine-containing subtype | Repeat | |
IPR036858 | Cyclin-dependent kinase, regulatory subunit superfamily | Homologous Superfamily | |
IPR000789 | Cyclin-dependent kinase, regulatory subunit | Family | |
IPR003175 | Cyclin-dependent kinase inhibitor domain | Domain | |
IPR044898 | Cyclin-dependent kinase inhibitor domain superfamily | Homologous Superfamily |