8BVM
Cryo-EM structure of Hfq-Crc-rbsB translation repression complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03372 | e8bvmA1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF03372 | ECOD (1.6) |
H | PF03372 | e8bvmH1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF03372 | ECOD (1.6) |
N | PF03372 | e8bvmN1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF03372 | ECOD (1.6) |
B | PF17209 | e8bvmB1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
C | PF17209 | e8bvmC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
D | PF17209 | e8bvmD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
E | PF17209 | e8bvmE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
F | PF17209 | e8bvmF1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
G | PF17209 | e8bvmG1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
I | PF17209 | e8bvmI1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
J | PF17209 | e8bvmJ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
K | PF17209 | e8bvmK1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
L | PF17209 | e8bvmL1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
M | PF17209 | e8bvmM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
O | PF17209 | e8bvmO1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03372 | Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos) | Endonuclease/Exonuclease/phosphatase family | This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling [1]. This family includes: AP endonuclease proteins EC:4.2.99.18 e.g Swiss:P27695, DNase I proteins EC:3. ... | Domain | |
PF17209 | Hfq protein (Hfq) | Hfq protein | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005135 | Endonuclease/exonuclease/phosphatase | Domain | |
IPR037493 | Exodeoxyribonuclease III-like | Family | |
IPR004808 | AP endonuclease 1 | Family | |
IPR036691 | Endonuclease/exonuclease/phosphatase superfamily | Homologous Superfamily | |
IPR010920 | LSM domain superfamily | Homologous Superfamily | |
IPR005001 | RNA-binding protein Hfq | Family | |
IPR047575 | Sm domain | Domain |