8BVH
Cryo-EM structure of the Hfq-Crc-amiE translation repression assembly.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth w] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
B [auth x] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
G [auth R] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
I [auth J] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
J [auth L] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
K [auth N] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
L [auth P] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
N [auth S] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
O [auth U] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
P [auth K] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
Q [auth M] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
S [auth Q] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
H [auth T] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
R [auth O] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth w] | PF17209 | e8bvhw1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
B [auth x] | PF17209 | e8bvhx1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
C | PF17209 | e8bvhC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
D | PF17209 | e8bvhD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
E | PF17209 | e8bvhE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
F | PF17209 | e8bvhF1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
G [auth R] | PF17209 | e8bvhR1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
I [auth J] | PF17209 | e8bvhJ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
J [auth L] | PF17209 | e8bvhL1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
K [auth N] | PF17209 | e8bvhN1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
L [auth P] | PF17209 | e8bvhP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
N [auth S] | PF17209 | e8bvhS1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
O [auth U] | PF17209 | e8bvhU1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
P [auth K] | PF17209 | e8bvhK1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
Q [auth M] | PF17209 | e8bvhM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
S [auth Q] | PF17209 | e8bvhQ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
H [auth T] | PF17209 | e8bvhT1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
R [auth O] | PF17209 | e8bvhO1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
M [auth H] | PF03372 | e8bvhH1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF03372 | ECOD (1.6) |
T [auth I] | PF03372 | e8bvhI1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF03372 | ECOD (1.6) |
W [auth G] | PF03372 | e8bvhG1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF03372 | ECOD (1.6) |
V [auth B] | PF03372 | e8bvhB1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF03372 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17209 | Hfq protein (Hfq) | Hfq protein | - | Domain | |
M [auth H], T [auth I], V [auth B], W [auth G] | PF03372 | Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos) | Endonuclease/Exonuclease/phosphatase family | This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling [1]. This family includes: AP endonuclease proteins EC:4.2.99.18 e.g Swiss:P27695, DNase I proteins EC:3. ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR010920 | LSM domain superfamily | Homologous Superfamily | |
IPR005001 | RNA-binding protein Hfq | Family | |
IPR047575 | Sm domain | Domain | |
M [auth H], T [auth I], V [auth B], W [auth G] | IPR005135 | Endonuclease/exonuclease/phosphatase | Domain |
M [auth H], T [auth I], V [auth B], W [auth G] | IPR037493 | Exodeoxyribonuclease III-like | Family |
M [auth H], T [auth I], V [auth B], W [auth G] | IPR004808 | AP endonuclease 1 | Family |
M [auth H], T [auth I], V [auth B], W [auth G] | IPR036691 | Endonuclease/exonuclease/phosphatase superfamily | Homologous Superfamily |