The E. coli TrpD2 protein YbiB in complex with a C-terminal peptide from ObgE
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Glycos_trans_3N | e8bftA1 | A: alpha arrays | X: Nucleoside phosphorylase/phosphoribosyltransferase-N (From Topology) | H: Nucleoside phosphorylase/phosphoribosyltransferase-N (From Topology) | T: Nucleoside phosphorylase/phosphoribosyltransferase-N | F: Glycos_trans_3N | ECOD (1.6) |
| A | Glycos_transf_3 | e8bftA2 | A: a/b three-layered sandwiches | X: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain (From Topology) | H: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain (From Topology) | T: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | F: Glycos_transf_3 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF02885 | Glycosyl transferase family, helical bundle domain (Glycos_trans_3N) | Glycosyl transferase family, helical bundle domain | This family includes anthranilate phosphoribosyltransferase (TrpD), thymidine phosphorylase. All these proteins can transfer a phosphorylated ribose substrate. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR031167 | OBG-type guanine nucleotide-binding (G) domain | Domain | |
| IPR045086 | OBG-type GTPase | Family | |
| IPR036726 | GTP1/OBG domain superfamily | Homologous Superfamily | |
| IPR014100 | GTP-binding protein Obg/CgtA | Family | |
| IPR006074 | GTP1/OBG, conserved site | Conserved Site | |
| IPR006169 | GTP1/OBG domain | Domain | |
| IPR006073 | GTP binding domain | Domain | |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
| IPR035902 | Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily | Homologous Superfamily | |
| IPR036320 | Glycosyl transferase family 3, N-terminal domain superfamily | Homologous Superfamily | |
| IPR005940 | Anthranilate phosphoribosyl transferase | Family | |
| IPR017459 | Glycosyl transferase family 3, N-terminal domain | Domain |














