8BE4
Crystal structure of SOS1-KRasG12V-Nanobody14
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth S] | SCOP2B Superfamily | Ras GEF | 8057967 | 3000128 | SCOP2B (2022-06-29) |
A [auth S] | SCOP2B Superfamily | ENTH/VHS domain-like | 8057961 | 3000164 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth S] | PF00617,PF00618 | e8be4S1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ras GEF (From Topology) | T: Ras GEF | F: PF00617,PF00618 | ECOD (1.6) |
B [auth R] | PF00071 | e8be4R1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
C [auth C000] | PF07686 | e8be4C0001 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth S] | PF00617 | RasGEF domain (RasGEF) | RasGEF domain | - | Family |
A [auth S] | PF00618 | RasGEF N-terminal motif (RasGEF_N) | RasGEF N-terminal motif | A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this motif/domain N-terminal to the RasGef (Cdc25-like) domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth S] | IPR000219 | Dbl homology (DH) domain | Domain |
A [auth S] | IPR008937 | Ras-like guanine nucleotide exchange factor | Family |
A [auth S] | IPR019804 | Ras guanine-nucleotide exchange factor, conserved site | Conserved Site |
A [auth S] | IPR036964 | Ras guanine-nucleotide exchange factor, catalytic domain superfamily | Homologous Superfamily |
A [auth S] | IPR035899 | Dbl homology (DH) domain superfamily | Homologous Superfamily |
A [auth S] | IPR023578 | Ras guanine nucleotide exchange factor domain superfamily | Homologous Superfamily |
A [auth S] | IPR001849 | Pleckstrin homology domain | Domain |
A [auth S] | IPR000651 | Ras-like guanine nucleotide exchange factor, N-terminal | Domain |
A [auth S] | IPR011993 | PH-like domain superfamily | Homologous Superfamily |
A [auth S] | IPR001895 | Ras guanine-nucleotide exchange factors catalytic domain | Domain |
A [auth S] | IPR009072 | Histone-fold | Homologous Superfamily |