8BD6 | pdb_00008bd6

Cas12k-sgRNA-dsDNA-TnsC non-productive complex.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
M [auth Z]	CDC48	e8bd6Z2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
M [auth Z]	AAA	e8bd6Z1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
L [auth Y]	CDC48	e8bd6Y2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
L [auth Y]	AAA	e8bd6Y1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
K [auth X]	CDC48	e8bd6X2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
K [auth X]	AAA	e8bd6X1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
J [auth W]	CDC48	e8bd6W2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
J [auth W]	AAA	e8bd6W1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
I [auth V]	CDC48	e8bd6V2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
I [auth V]	AAA	e8bd6V1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
H [auth U]	CDC48	e8bd6U2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
H [auth U]	AAA	e8bd6U1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
G [auth T]	CDC48	e8bd6T2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
G [auth T]	AAA	e8bd6T1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
F [auth S]	CDC48	e8bd6S2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
F [auth S]	AAA	e8bd6S1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
E [auth R]	CDC48	e8bd6R2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
E [auth R]	AAA	e8bd6R1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth R], F [auth S], G [auth T], H [auth U], I [auth V], E [auth R], F [auth S], G [auth T], H [auth U], I [auth V], J [auth W], K [auth X], L [auth Y], M [auth Z]	PF05621	Bacterial TniB protein (TniB)	Bacterial TniB protein	This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [1] which is involved in Tn5053 mercury resistance transposition [2]. This entry represents a P-loop domain.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth R], F [auth S], G [auth T], H [auth U], I [auth V], E [auth R], F [auth S], G [auth T], H [auth U], I [auth V], J [auth W], K [auth X], L [auth Y], M [auth Z]	IPR008868	Bacterial TniB	Family
E [auth R], F [auth S], G [auth T], H [auth U], I [auth V], E [auth R], F [auth S], G [auth T], H [auth U], I [auth V], J [auth W], K [auth X], L [auth Y], M [auth Z]	IPR052026	ExeA/AAA ATPase DNA-binding & secretion	Family
E [auth R], F [auth S], G [auth T], H [auth U], I [auth V], E [auth R], F [auth S], G [auth T], H [auth U], I [auth V], J [auth W], K [auth X], L [auth Y], M [auth Z]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR049868	Type V CRISPR-associated protein Cas12k	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.