8BCM

Structure of Synechococcus elongatus PCC 7942 Rubisco recombinantly expressed from E.coli

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth D]	PF00101	e8bcmD1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
C [auth E]	PF00101	e8bcmE1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
D [auth K]	PF00101	e8bcmK1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
E [auth N]	PF00101	e8bcmN1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
F [auth L]	PF00101	e8bcmL1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
G [auth O]	PF00101	e8bcmO1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
H [auth M]	PF00101	e8bcmM1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
I [auth P]	PF00101	e8bcmP1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
B [auth C]	PF02788	e8bcmC2	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
B [auth C]	PF00016	e8bcmC1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
J [auth B]	PF02788	e8bcmB1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
J [auth B]	PF00016	e8bcmB2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
K [auth A]	PF02788	e8bcmA2	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
K [auth A]	PF00016	e8bcmA1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
L [auth H]	PF02788	e8bcmH1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
L [auth H]	PF00016	e8bcmH2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
M [auth F]	PF02788	e8bcmF1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
M [auth F]	PF00016	e8bcmF2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
N [auth I]	PF02788	e8bcmI2	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
N [auth I]	PF00016	e8bcmI1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
O [auth G]	PF02788	e8bcmG2	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
O [auth G]	PF00016	e8bcmG1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
P [auth J]	PF02788	e8bcmJ2	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
P [auth J]	PF00016	e8bcmJ1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D], C [auth E], D [auth K], E [auth N], F [auth L], A [auth D], C [auth E], D [auth K], E [auth N], F [auth L], G [auth O], H [auth M], I [auth P]	Ribulose 1,5-bisphosphate carboxylase small subunit	ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	cellular metabolic process metabolic process cellular process cellular metabolic compound salvage photorespiration carbohydrate metabolic process photosynthesis carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process organic substance metabolic process biosynthetic process reductive pentose-phosphate cycle organic substance biosynthetic process cellular metabolic process metabolic process cellular process cellular metabolic compound salvage photorespiration carbohydrate metabolic process photosynthesis carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process organic substance metabolic process biosynthetic process reductive pentose-phosphate cycle organic substance biosynthetic process carbon fixation	intracellular organelle bacterial microcompartment intracellular anatomical structure organelle carboxysome intracellular non-membrane-bounded organelle cellular anatomical entity non-membrane-bounded organelle
B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], N [auth I], O [auth G], P [auth J]	Ribulose bisphosphate carboxylase large chain	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity monooxygenase activity oxidoreductase activity	cellular metabolic process metabolic process cellular process cellular metabolic compound salvage photorespiration carbohydrate metabolic process photosynthesis carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process organic substance metabolic process biosynthetic process reductive pentose-phosphate cycle organic substance biosynthetic process cellular metabolic process metabolic process cellular process cellular metabolic compound salvage photorespiration carbohydrate metabolic process photosynthesis carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process organic substance metabolic process biosynthetic process reductive pentose-phosphate cycle organic substance biosynthetic process carbon fixation	intracellular organelle bacterial microcompartment intracellular anatomical structure organelle carboxysome intracellular non-membrane-bounded organelle cellular anatomical entity non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth D], C [auth E], D [auth K], E [auth N], F [auth L], A [auth D], C [auth E], D [auth K], E [auth N], F [auth L], G [auth O], H [auth M], I [auth P]	IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	Homologous Superfamily
A [auth D], C [auth E], D [auth K], E [auth N], F [auth L], A [auth D], C [auth E], D [auth K], E [auth N], F [auth L], G [auth O], H [auth M], I [auth P]	IPR024681	Ribulose bisphosphate carboxylase, small subunit	Family
A [auth D], C [auth E], D [auth K], E [auth N], F [auth L], A [auth D], C [auth E], D [auth K], E [auth N], F [auth L], G [auth O], H [auth M], I [auth P]	IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	Domain
B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], N [auth I], O [auth G], P [auth J]	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], N [auth I], O [auth G], P [auth J]	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], N [auth I], O [auth G], P [auth J]	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], N [auth I], O [auth G], P [auth J]	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], N [auth I], O [auth G], P [auth J]	IPR033966	RuBisCO	Family
B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], N [auth I], O [auth G], P [auth J]	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain
B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], B [auth C], J [auth B], K [auth A], L [auth H], M [auth F], N [auth I], O [auth G], P [auth J]	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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8BCM

Structure of Synechococcus elongatus PCC 7942 Rubisco recombinantly expressed from E.coli

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage