8B9F | pdb_00008b9f

Structure of Echovirus 11 complexed with DAF (CD55) calculated from symmetry expansion


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth E]SCOP2B SuperfamilySushi/CCP/SCR domain 8044483 3000902 SCOP2B (2022-06-29)
A [auth E]SCOP2B SuperfamilySushi/CCP/SCR domain 8044485 3000902 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CRhv_3e8b9fC1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_3ECOD (1.6)
BRhv_1e8b9fB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_1ECOD (1.6)
A [auth E]Sushi_4e8b9fE4 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: Complement control module/SCR domainF: Sushi_4ECOD (1.6)
A [auth E]Sushi_3e8b9fE1 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: Complement control module/SCR domainF: Sushi_3ECOD (1.6)
A [auth E]Sushi_1e8b9fE2 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: Complement control module/SCR domainF: Sushi_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth E]2.10.70.10 Mainly Beta Ribbon Complement Module domain 1CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth E]PF00084Sushi repeat (SCR repeat) (Sushi)Sushi repeat (SCR repeat)Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth A]Genome polyprotein
Genome polyprotein
Genome polyprotein
A [auth E]Complement decay-accelerating factor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth A]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
D [auth A]IPR002527Picornavirus 2B proteinDomain
D [auth A]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
D [auth A]IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
D [auth A]IPR003593AAA+ ATPase domainDomain
D [auth A]IPR003138Picornavirus coat protein VP4Family
D [auth A]IPR000199Peptidase C3A/C3B, picornaviralDomain
D [auth A]IPR001676Picornavirus capsidDomain
D [auth A]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
D [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth A]IPR000081Peptidase C3, picornavirus core protein 2ADomain
D [auth A]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth A]IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth A]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth A]IPR044067Picornavirales 3C/3C-like protease domainDomain
D [auth A]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth A]IPR014838Poliovirus 3A protein-likeDomain
D [auth A]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
D [auth A]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
D [auth A]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth A]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
A [auth E]IPR000436Sushi/SCR/CCP domainDomain
A [auth E]IPR035976Sushi/SCR/CCP superfamilyHomologous Superfamily
A [auth E]IPR050350Complement & Cell Adhesion RegulatorsFamily