8B9A
S. cerevisiae replisome + Ctf4, bound by pol alpha primase. Complex engaged with a fork DNA substrate containing a 60 nucleotide lagging strand.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
H [auth B] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8053388 | 3000135 | SCOP2B (2022-06-29) |
H [auth B] | SCOP2B Superfamily | Metallo-dependent phosphatases | 8053387 | 3001067 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 2] | PF17207 | e8b9a24 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
A [auth 2] | PF17855 | e8b9a23 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
A [auth 2] | PF14551 | e8b9a21 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
A [auth 2] | PF00493 | e8b9a22 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
J [auth D] | PF05916 | e8b9aD1 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF2 C-terminal domain-like | F: PF05916 | ECOD (1.6) |
J [auth D] | F_UNCLASSIFIED | e8b9aD2 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth E] | PF05916 | e8b9aE1 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF2 C-terminal domain-like | F: PF05916 | ECOD (1.6) |
K [auth E] | PF22466 | e8b9aE2 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: PF22466 | ECOD (1.6) |
L [auth F] | PF05916 | e8b9aF2 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF1 N-terminal domain-like | F: PF05916 | ECOD (1.6) |
L [auth F] | PF16922 | e8b9aF1 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: PF16922 | ECOD (1.6) |
M [auth G] | PF02724 | e8b9aG1 | A: alpha arrays | X: HhH/H2TH | H: Cdc45 CID domain (From Topology) | T: Cdc45 CID domain | F: PF02724 | ECOD (1.6) |
M [auth G] | PF02724 | e8b9aG2 | A: a+b three layers | X: C-terminal domain in DHH phosphoesterases (From Topology) | H: C-terminal domain in DHH phosphoesterases (From Topology) | T: C-terminal domain in DHH phosphoesterases | F: PF02724 | ECOD (1.6) |
M [auth G] | PF02724 | e8b9aG3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: DHH phosphoesterases | F: PF02724 | ECOD (1.6) |
N [auth J] | PF08996 | e8b9aJ1 | A: few secondary structure elements | X: Rubredoxin-like | H: Zinc finger domain of DNA polymerase-alpha (From Topology) | T: Zinc finger domain of DNA polymerase-alpha | F: PF08996 | ECOD (1.6) |
R [auth S] | F_UNCLASSIFIED | e8b9aS1 | A: alpha arrays | X: Insert all-alpha domain in prim-pol (From Topology) | H: Insert all-alpha domain in prim-pol (From Topology) | T: Insert all-alpha domain in prim-pol | F: F_UNCLASSIFIED | ECOD (1.6) |
R [auth S] | PF01896 | e8b9aS2 | A: a+b complex topology | X: Prim-pol domain (From Topology) | H: Prim-pol domain (From Topology) | T: Prim-pol domain | F: PF01896 | ECOD (1.6) |
B [auth 3] | PF17207 | e8b9a33 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
B [auth 3] | PF17855 | e8b9a32 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
B [auth 3] | PF14551 | e8b9a35 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
B [auth 3] | PF00493 | e8b9a31 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
B [auth 3] | F_UNCLASSIFIED | e8b9a34 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
V [auth L] | PF12341 | e8b9aL2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: PF12341 | ECOD (1.6) |
V [auth L] | PF20946 | e8b9aL1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: DNA polymerase alpha-binding protein Ctf4 C-terminal domain (From Topology) | T: DNA polymerase alpha-binding protein Ctf4 C-terminal domain | F: PF20946 | ECOD (1.6) |
U [auth H] | PF12341 | e8b9aH2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: PF12341 | ECOD (1.6) |
U [auth H] | PF20946 | e8b9aH1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: DNA polymerase alpha-binding protein Ctf4 C-terminal domain (From Topology) | T: DNA polymerase alpha-binding protein Ctf4 C-terminal domain | F: PF20946 | ECOD (1.6) |
W [auth K] | PF12341 | e8b9aK2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: PF12341 | ECOD (1.6) |
W [auth K] | PF20946 | e8b9aK1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: DNA polymerase alpha-binding protein Ctf4 C-terminal domain (From Topology) | T: DNA polymerase alpha-binding protein Ctf4 C-terminal domain | F: PF20946 | ECOD (1.6) |
C [auth 4] | PF17207 | e8b9a45 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
C [auth 4] | PF17855 | e8b9a44 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
C [auth 4] | PF14551 | e8b9a43 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
C [auth 4] | PF00493 | e8b9a42 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
C [auth 4] | PF17207 | e8b9a41 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF17207 | ECOD (1.6) |
D [auth 5] | PF17207 | e8b9a53 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
D [auth 5] | PF17855 | e8b9a54 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
D [auth 5] | PF14551 | e8b9a55 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
D [auth 5] | PF00493 | e8b9a51 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
D [auth 5] | F_UNCLASSIFIED | e8b9a52 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth 6] | PF17207 | e8b9a64 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
E [auth 6] | PF17855 | e8b9a62 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
E [auth 6] | PF14551 | e8b9a65 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
E [auth 6] | PF00493 | e8b9a63 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
E [auth 6] | PF17207 | e8b9a61 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF17207 | ECOD (1.6) |
F [auth 7] | PF17207 | e8b9a73 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
F [auth 7] | PF17855 | e8b9a72 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
F [auth 7] | PF14551 | e8b9a74 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
F [auth 7] | PF00493 | e8b9a71 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
F [auth 7] | F_UNCLASSIFIED | e8b9a75 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth A] | PF04104 | e8b9aA1 | A: alpha complex topology | X: PriB N-terminal domain-like (From Topology) | H: PriB N-terminal domain-like (From Topology) | T: PriB N-terminal domain-like | F: PF04104 | ECOD (1.6) |
I [auth C] | PF05916 | e8b9aC2 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF1 N-terminal domain-like | F: PF05916 | ECOD (1.6) |
I [auth C] | F_UNCLASSIFIED | e8b9aC1 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 2] | PF12619 | Mini-chromosome maintenance protein 2 (MCM2_N) | Mini-chromosome maintenance protein 2 | - | Family |
A [auth 2] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
A [auth 2] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
A [auth 2] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
A [auth 2] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
J [auth D] | PF05916 | GINS complex protein (Sld5) | GINS complex protein | - | Family |
K [auth E] | PF05916 | GINS complex protein (Sld5) | GINS complex protein | - | Family |
L [auth F] | PF05916 | GINS complex protein (Sld5) | GINS complex protein | - | Family |
L [auth F] | PF16922 | DNA replication complex GINS protein SLD5 C-terminus (SLD5_C) | DNA replication complex GINS protein SLD5 C-terminus | The C-terminal domain of DNA replication complex GINS protein SLD5 is important in the assembly of the GINS complex, a complex which is involved in initiation of DNA replication and progression of DNA replication forks [1]. | Domain |
M [auth G] | PF02724 | CDC45-like protein (CDC45) | CDC45-like protein | - | Family |
R [auth S] | PF01896 | DNA primase small subunit (DNA_primase_S) | DNA primase small subunit | - | Family |
S [auth X] | PF04821 | Timeless protein (TIMELESS) | Timeless protein | - | Family |
B [auth 3] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
B [auth 3] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
B [auth 3] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
B [auth 3] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
T [auth Y] | PF07962 | Replication Fork Protection Component Swi3 (Swi3) | Replication Fork Protection Component Swi3 | - | Family |
U [auth H], V [auth L], W [auth K] | PF12341 | Minichromosome loss protein, Mcl1, middle region (Mcl1_mid) | Minichromosome loss protein, Mcl1, middle region | - | Repeat |
U [auth H], V [auth L], W [auth K] | PF20946 | DNA polymerase alpha-binding protein Ctf4, C-terminal domain (Ctf4_C) | DNA polymerase alpha-binding protein Ctf4, C-terminal domain | This domain is found at the C-terminal end of DNA polymerase alpha- binding protein Ctf4 from yeast, its human orthologue AND1, and similar proteins from eukaryotes. This accessory factor for DNA replication plays a role in accurately duplicating the ... | Domain |
C [auth 4] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
C [auth 4] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
C [auth 4] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
C [auth 4] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
D [auth 5] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
D [auth 5] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
D [auth 5] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
E [auth 6] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
E [auth 6] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
E [auth 6] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
E [auth 6] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
F [auth 7] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
F [auth 7] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
F [auth 7] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
F [auth 7] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
G [auth A] | PF04104 | Eukaryotic and archaeal DNA primase, large subunit (DNA_primase_lrg) | Eukaryotic and archaeal DNA primase, large subunit | - | Family |
H [auth B] | PF04042 | DNA polymerase alpha/epsilon subunit B (DNA_pol_E_B) | DNA polymerase alpha/epsilon subunit B | - | Family |
H [auth B] | PF08418 | DNA polymerase alpha subunit B N-terminal (Pol_alpha_B_N) | DNA polymerase alpha subunit B N-terminal | This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation [1]. This domain adopts an OB fold [2]. | Domain |
I [auth C] | PF05916 | GINS complex protein (Sld5) | GINS complex protein | - | Family |