8B0J
CryoEM structure of bacterial RNaseE.RapZ.GlmZ complex central to the control of cell envelope biogenesis
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth L] | SCOP2B Superfamily | Ribonuclease H-like | 8102251 | 3000143 | SCOP2B (2022-06-29) |
E [auth L] | SCOP2B Superfamily | MK0968-like | 8102253 | 3002481 | SCOP2B (2022-06-29) |
E [auth L] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8039601 | 3000135 | SCOP2B (2022-06-29) |
E [auth L] | SCOP2B Superfamily | DnaJ/Hsp40 cysteine-rich domain-like | 8102255 | 3001550 | SCOP2B (2022-06-29) |
E [auth L] | SCOP2B Superfamily | Ribonuclease H-like | 8102251 | 3000143 | SCOP2B (2022-06-29) |
E [auth L] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8102249 | 3000100 | SCOP2B (2022-06-29) |
F [auth N] | SCOP2B Superfamily | Type III KH-domain | 8102257 | 3002727 | SCOP2B (2022-06-29) |
F [auth N] | SCOP2B Superfamily | Ribonuclease H-like | 8102251 | 3000143 | SCOP2B (2022-06-29) |
F [auth N] | SCOP2B Superfamily | MK0968-like | 8102253 | 3002481 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03668 | e8b0jA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF03668 | ECOD (1.6) |
A | PF22740 | e8b0jA1 | A: a/b three-layered sandwiches | X: Phosphofructokinase C-terminal domain (From Topology) | H: Phosphofructokinase C-terminal domain (From Topology) | T: Phosphofructokinase C-terminal domain | F: PF22740 | ECOD (1.6) |
B | PF03668 | e8b0jB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF03668 | ECOD (1.6) |
B | PF22740 | e8b0jB1 | A: a/b three-layered sandwiches | X: Phosphofructokinase C-terminal domain (From Topology) | H: Phosphofructokinase C-terminal domain (From Topology) | T: Phosphofructokinase C-terminal domain | F: PF22740 | ECOD (1.6) |
C [auth D] | PF03668 | e8b0jD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF03668 | ECOD (1.6) |
C [auth D] | PF22740 | e8b0jD2 | A: a/b three-layered sandwiches | X: Phosphofructokinase C-terminal domain (From Topology) | H: Phosphofructokinase C-terminal domain (From Topology) | T: Phosphofructokinase C-terminal domain | F: PF22740 | ECOD (1.6) |
D [auth C] | PF03668 | e8b0jC2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF03668 | ECOD (1.6) |
D [auth C] | PF22740 | e8b0jC1 | A: a/b three-layered sandwiches | X: Phosphofructokinase C-terminal domain (From Topology) | H: Phosphofructokinase C-terminal domain (From Topology) | T: Phosphofructokinase C-terminal domain | F: PF22740 | ECOD (1.6) |
E [auth L] | PF00575 | e8b0jL4 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00575 | ECOD (1.6) |
E [auth L] | PF10150 | e8b0jL1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF10150 | ECOD (1.6) |
E [auth L] | PF20833 | e8b0jL2 | A: a+b three layers | X: Thioredoxin-like domain in RNase E (From Topology) | H: Thioredoxin-like domain in RNase E (From Topology) | T: Thioredoxin-like domain in RNase E | F: PF20833 | ECOD (1.6) |
E [auth L] | PF10150 | e8b0jL5 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF10150 | ECOD (1.6) |
E [auth L] | PF10150 | e8b0jL3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF10150 | ECOD (1.6) |
F [auth N] | F_UNCLASSIFIED | e8b0jN4 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth N] | PF20833 | e8b0jN3 | A: a+b three layers | X: Thioredoxin-like domain in RNase E (From Topology) | H: Thioredoxin-like domain in RNase E (From Topology) | T: Thioredoxin-like domain in RNase E | F: PF20833 | ECOD (1.6) |
F [auth N] | PF10150 | e8b0jN1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF10150 | ECOD (1.6) |
F [auth N] | PF10150 | e8b0jN2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF10150 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, C [auth D], D [auth C] | PF03668 | P-loop ATPase protein family (ATP_bind_2) | P-loop ATPase protein family | This family contains an ATP-binding site and could be an ATPase (personal obs:C Yeats). | Domain |
E [auth L], F [auth N] | PF20833 | RNase E/G, Thioredoxin-like domain (RNase_E_G_Thio) | RNase E/G, Thioredoxin-like domain | Both RNase E and its homologue RNase G are endoribonucleases that play central roles in RNA processing. RNase E shows two globular domains. This entry represents the smaller domain, which shows a thioredoxin-like fold [1-3]. | Domain |
E [auth L], F [auth N] | PF10150 | Ribonuclease E/G family (RNase_E_G) | Ribonuclease E/G family | - | Family |
E [auth L], F [auth N] | PF00575 | S1 RNA binding domain (S1) | S1 RNA binding domain | The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B, C [auth D], D [auth C] | IPR005337 | RapZ-like family | Family |
A, B, C [auth D], D [auth C] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
E [auth L], F [auth N] | IPR028878 | Ribonuclease E | Family |
E [auth L], F [auth N] | IPR004659 | Ribonuclease E/G | Family |
E [auth L], F [auth N] | IPR003029 | S1 domain | Domain |
E [auth L], F [auth N] | IPR019307 | RNA-binding protein AU-1/Ribonuclease E/G | Family |
E [auth L], F [auth N] | IPR021968 | Polyribonucleotide phosphorylase C-terminal | Domain |
E [auth L], F [auth N] | IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily |
E [auth L], F [auth N] | IPR048583 | RNase E/G, thioredoxin-like domain | Domain |