8B0A

Cryo-EM structure of ALC1 bound to an asymmetric, site-specifically PARylated nucleosome

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2B Superfamily	Core histone-like	8041272	3001387	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	Core histone-like	8041272	3001387	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
I [auth H]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth K]	PF00176	e8b0aK1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00176	ECOD (1.6)
A [auth K]	PF00271	e8b0aK2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00271	ECOD (1.6)
B [auth A]	PF00125	e8b0aA1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)
F [auth E]	PF00125	e8b0aE1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)
C [auth B]	PF15511	e8b0aB1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF15511	ECOD (1.6)
G [auth F]	PF15511	e8b0aF1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF15511	ECOD (1.6)
D [auth C]	PF00125,PF16211	e8b0aC1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125,PF16211	ECOD (1.6)
H [auth G]	PF00125,PF16211	e8b0aG1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125,PF16211	ECOD (1.6)
E [auth D]	PF00125	e8b0aD1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)
I [auth H]	PF00125	e8b0aH1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth K]	Chromodomain-helicase-DNA-binding protein 1-like	binding nucleoside phosphate binding organic cyclic compound binding nucleotide binding heterocyclic compound binding small molecule binding ATP-dependent activity, acting on DNA DNA helicase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity ATP-dependent chromatin remodeler activity binding nucleoside phosphate binding organic cyclic compound binding nucleotide binding heterocyclic compound binding small molecule binding ATP-dependent activity, acting on DNA DNA helicase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity ATP-dependent chromatin remodeler activity adenyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding carbohydrate derivative binding ribonucleotide binding ADP-D-ribose modification-dependent protein binding poly-ADP-D-ribose modification-dependent protein binding protein binding modification-dependent protein binding histone reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides protein-containing complex binding chromatin binding nucleosome binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process metabolic process macromolecule metabolic process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process metabolic process macromolecule metabolic process DNA repair protein-DNA complex organization cellular component organization protein-containing complex organization chromatin organization chromatin remodeling cellular component organization or biogenesis	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen site of double-strand break intracellular non-membrane-bounded organelle site of DNA damage chromosome non-membrane-bounded organelle
B [auth A], F [auth E]	Histone H3	DNA binding binding organic cyclic compound binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome chromatin chromosome cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle membrane-bounded organelle nucleus membrane-enclosed lumen protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome chromatin chromosome cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
C [auth B], G [auth F]	Histone H4	DNA binding binding organic cyclic compound binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome chromatin chromosome cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
D [auth C], H [auth G]	Histone H2A type 1	DNA binding binding organic cyclic compound binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome chromatin chromosome cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
E [auth D], I [auth H]	Histone H2B 1.1	DNA binding binding organic cyclic compound binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome chromatin chromosome cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
J [auth I]	DNA (149-MER) Widom 601 sequence	-	-	-
K [auth J]	DNA (149-MER) Widom 601 sequence	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth K]	IPR000330	SNF2, N-terminal	Domain
A [auth K]	IPR049730	SNF2/RAD5-like, C-terminal helicase domain	Domain
A [auth K]	IPR002464	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Conserved Site
A [auth K]	IPR038718	SNF2-like, N-terminal domain superfamily	Homologous Superfamily
A [auth K]	IPR031053	Chromodomain-helicase-DNA-binding protein 1-like	Family
A [auth K]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A [auth K]	IPR002589	Macro domain	Domain
A [auth K]	IPR001650	Helicase, C-terminal domain-like	Domain
A [auth K]	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
A [auth K]	IPR043472	Macro domain-like	Homologous Superfamily
B [auth A], F [auth E]	IPR009072	Histone-fold	Homologous Superfamily
B [auth A], F [auth E]	IPR007125	Histone H2A/H2B/H3	Domain
B [auth A], F [auth E]	IPR000164	Histone H3/CENP-A	Family
C [auth B], G [auth F]	IPR009072	Histone-fold	Homologous Superfamily
C [auth B], G [auth F]	IPR001951	Histone H4	Family
C [auth B], G [auth F]	IPR035425	CENP-T/Histone H4, histone fold	Domain
C [auth B], G [auth F]	IPR019809	Histone H4, conserved site	Conserved Site
C [auth B], G [auth F]	IPR004823	TATA box binding protein associated factor (TAF), histone-like fold domain	Domain
D [auth C], H [auth G]	IPR009072	Histone-fold	Homologous Superfamily
D [auth C], H [auth G]	IPR007125	Histone H2A/H2B/H3	Domain
D [auth C], H [auth G]	IPR002119	Histone H2A	Family
D [auth C], H [auth G]	IPR032454	Histone H2A, C-terminal domain	Domain
D [auth C], H [auth G]	IPR032458	Histone H2A conserved site	Conserved Site
E [auth D], I [auth H]	IPR009072	Histone-fold	Homologous Superfamily
E [auth D], I [auth H]	IPR007125	Histone H2A/H2B/H3	Domain
E [auth D], I [auth H]	IPR000558	Histone H2B	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth K]	Pharos: Q86WJ1	substance dependence Substance-Related Disorders astrocytic tumor congenital anomaly of kidney and urinary tract lung cancer ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia substance abuse thrombocytopenia-absent radius syndrome atypical teratoid rhabdoid tumor pancreatic intraductal papillary-mucinous carcinoma substance-related disorder chromosome 1q21.1 deletion syndrome drug dependence large cell medulloblastoma substance dependence Substance-Related Disorders astrocytic tumor congenital anomaly of kidney and urinary tract lung cancer ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia substance abuse thrombocytopenia-absent radius syndrome atypical teratoid rhabdoid tumor pancreatic intraductal papillary-mucinous carcinoma substance-related disorder chromosome 1q21.1 deletion syndrome drug dependence large cell medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm psoriasis