8AYL

Resting state GluA1/A2 AMPA receptor in complex with TARP gamma 8 and ligand JNJ-61432059

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth B]SCOP2B SuperfamilyType 2 solute binding protein-like8036483 3000083 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyType 2 solute binding protein-like8036483 3000083 SCOP2B (2022-06-29)
B [auth J]SCOP2B SuperfamilyClaudin-like8094098 3002606 SCOP2B (2022-06-29)
C [auth I]SCOP2B SuperfamilyClaudin-like8094098 3002606 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]PF00060e8aylB2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00060ECOD (1.6)
A [auth B]PF10613e8aylB1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF10613ECOD (1.6)
E [auth D]PF00060e8aylD2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00060ECOD (1.6)
E [auth D]PF10613e8aylD1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF10613ECOD (1.6)
B [auth J]PF00822e8aylJ1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: PF00822ECOD (1.6)
C [auth I]PF00822e8aylI1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: PF00822ECOD (1.6)
D [auth A]PF00060e8aylA2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00060ECOD (1.6)
D [auth A]PF10613e8aylA1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF10613ECOD (1.6)
F [auth C]PF00060e8aylC2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00060ECOD (1.6)
F [auth C]PF10613e8aylC1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF10613ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B],
E [auth D]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A [auth B],
E [auth D]		PF00497Bacterial extracellular solute-binding proteins, family 3 (SBP_bac_3)Bacterial extracellular solute-binding proteins, family 3This is a sensor domain found in solute-binding protein family 3 members from Gram-positive bacteria, Gram-negative bacteria and archaea. It can also be found in the N-terminal of the membrane-bound lytic murein transglycosylase F (MltF) protein. Th ...This is a sensor domain found in solute-binding protein family 3 members from Gram-positive bacteria, Gram-negative bacteria and archaea. It can also be found in the N-terminal of the membrane-bound lytic murein transglycosylase F (MltF) protein. This domain recognises Nicotinate, quidalnate, pyridine-2,5-dicarboxylate and salicylate [1].
Domain
A [auth B],
E [auth D]		PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain
B [auth J],
C [auth I]		PF00822PMP-22/EMP/MP20/Claudin family (PMP22_Claudin)PMP-22/EMP/MP20/Claudin family- Family
D [auth A],
F [auth C]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
D [auth A],
F [auth C]		PF00497Bacterial extracellular solute-binding proteins, family 3 (SBP_bac_3)Bacterial extracellular solute-binding proteins, family 3This is a sensor domain found in solute-binding protein family 3 members from Gram-positive bacteria, Gram-negative bacteria and archaea. It can also be found in the N-terminal of the membrane-bound lytic murein transglycosylase F (MltF) protein. Th ...This is a sensor domain found in solute-binding protein family 3 members from Gram-positive bacteria, Gram-negative bacteria and archaea. It can also be found in the N-terminal of the membrane-bound lytic murein transglycosylase F (MltF) protein. This domain recognises Nicotinate, quidalnate, pyridine-2,5-dicarboxylate and salicylate [1].
Domain
D [auth A],
F [auth C]		PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B],
E [auth D]		Isoform Flip of Glutamate receptor 2
B [auth J],
C [auth I]		Voltage-dependent calcium channel gamma-8 subunit
D [auth A],
F [auth C]		Isoform Flip of Glutamate receptor 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B],
E [auth D]		IPR001638Solute-binding protein family 3/N-terminal domain of MltFDomain
A [auth B],
E [auth D]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
A [auth B],
E [auth D]		IPR001508Ionotropic glutamate receptor, metazoaFamily
A [auth B],
E [auth D]		IPR001828Receptor, ligand binding regionDomain
A [auth B],
E [auth D]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
A [auth B],
E [auth D]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A [auth B],
E [auth D]		IPR015683Ionotropic glutamate receptorFamily
B [auth J],
C [auth I]		IPR008372Voltage-dependent calcium channel, gamma-8 subunitFamily
B [auth J],
C [auth I]		IPR004031PMP-22/EMP/MP20/ClaudinFamily
B [auth J],
C [auth I]		IPR008368Voltage-dependent calcium channel, gamma subunitFamily
D [auth A],
F [auth C]		IPR001638Solute-binding protein family 3/N-terminal domain of MltFDomain
D [auth A],
F [auth C]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
D [auth A],
F [auth C]		IPR001828Receptor, ligand binding regionDomain
D [auth A],
F [auth C]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
D [auth A],
F [auth C]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
D [auth A],
F [auth C]		IPR001508Ionotropic glutamate receptor, metazoaFamily
D [auth A],
F [auth C]		IPR015683Ionotropic glutamate receptorFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
OPMTransmembraneAlpha-helical polytopicIon channel (VIC) superfamilyGlutamate-gated Ion Channel (GIC) family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM