8AYK | pdb_00008ayk

Crystal structure of D-amino acid aminotrensferase from Aminobacterium colombiense complexed with D-glutamate

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BF5_F8_type_Ce8aykB1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
AF5_F8_type_Ce8aykA1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF01063Amino-transferase class IV (Aminotran_4)Amino-transferase class IVThe D-amino acid transferases (D-AAT) are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the diff ...The D-amino acid transferases (D-AAT) are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Aminotransferase class IV -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR050571Class-IV Pyridoxal-Phosphate-Dependent AminotransferaseFamily
A, B
IPR043132Branched-chain-amino-acid aminotransferase-like, C-terminalHomologous Superfamily
A, B
IPR043131Branched-chain-amino-acid aminotransferase-like, N-terminalHomologous Superfamily
A, B
IPR001544Aminotransferase class IVFamily
A, B
IPR036038Aminotransferase-like, PLP-dependent enzymesHomologous Superfamily