8ATH

CRYSTAL STRUCTURE OF LAMP1 IN COMPLEX WITH FAB-B.

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF01299e8athA1 A: beta meandersX: lysosome-associated membrane protein LAMP-3 (From Topology)H: lysosome-associated membrane protein LAMP-3 (From Topology)T: lysosome-associated membrane protein LAMP-3F: PF01299ECOD (1.6)
BPF01299e8athB1 A: beta meandersX: lysosome-associated membrane protein LAMP-3 (From Topology)H: lysosome-associated membrane protein LAMP-3 (From Topology)T: lysosome-associated membrane protein LAMP-3F: PF01299ECOD (1.6)
C [auth E]PF07654e8athE2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
C [auth E]PF07686e8athE1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
E [auth H]PF07654e8athH2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
E [auth H]PF07686e8athH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
D [auth F]PF07654e8athF2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
D [auth F]PF07686e8athF1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
F [auth L]PF07654e8athL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
F [auth L]PF07686e8athL2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
C [auth E],
E [auth H]		Heavy ChainIGHV1 -lysosome-associated membrane glycoprotein 1SAbDab (2024-05-03)
D [auth F],
F [auth L]		Light ChainIGKV19 Kappalysosome-associated membrane glycoprotein 1SAbDab (2024-05-03)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF01299Lysosome-associated membrane glycoprotein (Lamp) (Lamp)Lysosome-associated membrane glycoprotein (Lamp)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Lysosome-associated membrane glycoprotein 1
C [auth E],
E [auth H]		Fab B Heavy Chain---
D [auth F],
F [auth L]		Fab B Light Chain---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR048524Lysosome-associated membrane glycoprotein 2-like, transmembrane domainDomain
A, B
IPR002000Lysosome-associated membrane glycoproteinFamily
A, B
IPR048528Lysosome-associated membrane glycoprotein 2-like, luminal domainsDomain
A, B
IPR018134Lysosome-associated membrane glycoprotein, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B
Pharos:  P11279