8APK

rotational state 3 of the Trypanosoma brucei mitochondrial ATP synthase dimer


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
T [auth A1]F_UNCLASSIFIEDe8apkA12 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
T [auth A1]PF00306e8apkA11 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: PF00306ECOD (1.6)
T [auth A1]PF00006e8apkA13 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00006ECOD (1.6)
U [auth B1]F_UNCLASSIFIEDe8apkB13 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
U [auth B1]PF00306e8apkB11 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: PF00306ECOD (1.6)
U [auth B1]PF00006e8apkB12 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00006ECOD (1.6)
V [auth C1]F_UNCLASSIFIEDe8apkC11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
V [auth C1]PF00306e8apkC13 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: PF00306ECOD (1.6)
V [auth C1]PF00006e8apkC12 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00006ECOD (1.6)
W [auth D1]PF02874e8apkD11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF02874ECOD (1.6)
W [auth D1]PF22919e8apkD12 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: PF22919ECOD (1.6)
W [auth D1]PF00006e8apkD13 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00006ECOD (1.6)
X [auth E1]PF02874e8apkE12 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF02874ECOD (1.6)
X [auth E1]PF22919e8apkE11 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: PF22919ECOD (1.6)
X [auth E1]PF00006e8apkE13 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00006ECOD (1.6)
Y [auth F1]PF02874e8apkF13 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF02874ECOD (1.6)
Y [auth F1]PF22919e8apkF11 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: PF22919ECOD (1.6)
Y [auth F1]PF00006e8apkF12 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00006ECOD (1.6)
Z [auth G1]PF00231e8apkG11 A: a/b three-layered sandwichesX: ATP synthase (F1-ATPase), gamma subunit (From Topology)H: ATP synthase (F1-ATPase), gamma subunit (From Topology)T: ATP synthase (F1-ATPase), gamma subunitF: PF00231ECOD (1.6)
AA [auth H1]PF02823e8apkH11 A: beta sandwichesX: Epsilon subunit of F1F0-ATP synthase-NH: Epsilon subunit of F1F0-ATP synthase-N (From Topology)T: Epsilon subunit of F1F0-ATP synthase-NF: PF02823ECOD (1.6)
AA [auth H1]F_UNCLASSIFIEDe8apkH12 A: alpha bundlesX: Long alpha-hairpinH: Epsilon subunit of F1F0-ATP synthase C-terminal domain (From Topology)T: Epsilon subunit of F1F0-ATP synthase C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
BA [auth I1]PF04627e8apkI11 A: extended segmentsX: Epsilon subunit of mitochondrial F1F0-ATP synthase (From Topology)H: Epsilon subunit of mitochondrial F1F0-ATP synthase (From Topology)T: Epsilon subunit of mitochondrial F1F0-ATP synthaseF: PF04627ECOD (1.6)
CA [auth J1]F_UNCLASSIFIEDe8apkJ11 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: F_UNCLASSIFIEDECOD (1.6)
DA [auth K1]F_UNCLASSIFIEDe8apkK11 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: F_UNCLASSIFIEDECOD (1.6)
EA [auth L1]F_UNCLASSIFIEDe8apkL11 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: F_UNCLASSIFIEDECOD (1.6)
GA [auth O1]PF00137e8apkO11 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: PF00137ECOD (1.6)
HA [auth P1]PF00137e8apkP11 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: PF00137ECOD (1.6)
IA [auth Q1]PF00137e8apkQ11 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: PF00137ECOD (1.6)
JA [auth R1]PF00137e8apkR11 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: PF00137ECOD (1.6)
KA [auth S1]PF00137e8apkS11 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: PF00137ECOD (1.6)
LA [auth T1]PF00137e8apkT11 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: PF00137ECOD (1.6)
MA [auth U1]PF00137e8apkU11 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: PF00137ECOD (1.6)
NA [auth V1]PF00137e8apkV11 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: PF00137ECOD (1.6)
OA [auth W1]PF00137e8apkW11 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: PF00137ECOD (1.6)
PA [auth X1]PF00137e8apkX11 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: PF00137ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
T [auth A1],
U [auth B1],
V [auth C1]
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.Domain
T [auth A1],
U [auth B1],
V [auth C1]
PF00306ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C)ATP synthase alpha/beta chain, C terminal domain- Domain
W [auth D1],
X [auth E1],
Y [auth F1]
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.Domain
W [auth D1],
X [auth E1],
Y [auth F1]
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.Domain
Z [auth G1]PF00231ATP synthase (ATP-synt)ATP synthase- Domain
AA [auth H1]PF02823ATP synthase, Delta/Epsilon chain, beta-sandwich domain (ATP-synt_DE_N)ATP synthase, Delta/Epsilon chain, beta-sandwich domainPart of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensit ...Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (Pfam:PF00213).
Domain
BA [auth I1]PF04627Mitochondrial ATP synthase epsilon chain (ATP-synt_Eps)Mitochondrial ATP synthase epsilon chain- Family
FA [auth M1]PF00213ATP synthase delta (OSCP) subunit (OSCP)ATP synthase delta (OSCP) subunit- Family
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit C- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L],
M [auth l]
subunit-e- -
B [auth M],
N [auth m]
subunit-g- - -
C [auth a]ATP synthase subunit a-
D [auth c]subunit-8- -
E [auth d]subunit-d- -
F [auth e]ATPTB1- -
G [auth f]subunit-f- -
H [auth g]ATPTB3- - -
I [auth h]ATPTB4- -
J [auth i]subunit-i/j- -
K [auth j]ATPTB6- -
L [auth k]subunit-k- -
O [auth n]ATPTB11- -
P [auth o]ATPTB12- -
Q [auth p]subunit-b- -
R [auth q]ATPEG3- - -
S [auth r]ATPEG4---
T [auth A1],
U [auth B1],
V [auth C1]
ATP synthase subunit alpha, mitochondrial -
W [auth D1],
X [auth E1],
Y [auth F1]
ATP synthase subunit beta, mitochondrial -
Z [auth G1]ATP synthase gamma subunit -
AA [auth H1]ATP synthase, epsilon chain, putative
BA [auth I1]ATP synthase subunit epsilon, mitochondrial -
CA [auth J1],
DA [auth K1],
EA [auth L1]
ATP synthase subunit p18, mitochondrial-
FA [auth M1]OSCP
ATPase subunit 9, putative

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
T [auth A1],
U [auth B1],
V [auth C1]
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
T [auth A1],
U [auth B1],
V [auth C1]
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
T [auth A1],
U [auth B1],
V [auth C1]
IPR005294ATP synthase, F1 complex, alpha subunitFamily
T [auth A1],
U [auth B1],
V [auth C1]
IPR033732ATP synthase, F1 complex, alpha subunit nucleotide-binding domainDomain
T [auth A1],
U [auth B1],
V [auth C1]
IPR000793ATP synthase, alpha subunit, C-terminalDomain
T [auth A1],
U [auth B1],
V [auth C1]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
W [auth D1],
X [auth E1],
Y [auth F1]
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
W [auth D1],
X [auth E1],
Y [auth F1]
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
W [auth D1],
X [auth E1],
Y [auth F1]
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
W [auth D1],
X [auth E1],
Y [auth F1]
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
W [auth D1],
X [auth E1],
Y [auth F1]
IPR003593AAA+ ATPase domainDomain
W [auth D1],
X [auth E1],
Y [auth F1]
IPR005722ATP synthase, F1 complex, beta subunitFamily
W [auth D1],
X [auth E1],
Y [auth F1]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
Z [auth G1]IPR000131ATP synthase, F1 complex, gamma subunitFamily
Z [auth G1]IPR035968ATP synthase, F1 complex, gamma subunit superfamilyHomologous Superfamily
AA [auth H1]IPR036771F0F1 ATP synthase delta/epsilon subunit, N-terminalHomologous Superfamily
AA [auth H1]IPR020546ATP synthase, F1 complex, delta/epsilon subunit, N-terminalDomain
AA [auth H1]IPR001469ATP synthase, F1 complex, delta/epsilon subunitFamily
BA [auth I1]IPR036742ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrialHomologous Superfamily
BA [auth I1]IPR006721ATP synthase, F1 complex, epsilon subunit, mitochondrialFamily
CA [auth J1],
DA [auth K1],
EA [auth L1]
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
FA [auth M1]IPR000711ATPase, OSCP/delta subunitFamily
FA [auth M1]IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamilyHomologous Superfamily
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR038662F1F0 ATP synthase subunit C superfamilyHomologous Superfamily
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding siteBinding Site
IPR000454ATP synthase, F0 complex, subunit CFamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain