8AMU | pdb_00008amu

RepB pMV158 OBD domain bound to DDR region

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Rep_2	e8amuF1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Origin of replication-binding domains	F: Rep_2	ECOD (1.6)
E	Rep_2	e8amuE1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Origin of replication-binding domains	F: Rep_2	ECOD (1.6)
B	Rep_2	e8amuB1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Origin of replication-binding domains	F: Rep_2	ECOD (1.6)
A	Rep_2	e8amuA1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Origin of replication-binding domains	F: Rep_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (utative)
E	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (utative)
B	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (utative)
A	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, E, F	PF01719	Plasmid replication protein, origin binding domain (Rep_OBD)	Plasmid replication protein, origin binding domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, H	DNA (5'-D(APAPAPAPGPTPCPGPCPCPGPAPAPAPAPGPTPCPGPCPCPGP*A)-3')	-	-	-
C, G	DNA (5'-D(TPCPGPGPCPGPAPCPTPTPTPTPCPGPGPCPGPAPCPTPTPTP*T)-3')	-	-	-
A, B, E, F	Replication protein RepB	DNA binding binding nucleic acid binding identical protein binding protein binding nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on DNA DNA topoisomerase activity catalytic activity, acting on a nucleic acid catalytic activity macromolecular conformation isomerase activity	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	intracellular anatomical structure cellular anatomical structure extrachromosomal circular DNA extrachromosomal DNA

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, E, F	IPR041919	Plasmid replication protein, C-terminal domain superfamily	Homologous Superfamily
A, B, E, F	IPR002631	Plasmid replication protein, origin binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.