Annotations: 8AE6

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth U]	PF03666	Nitrogen Permease regulator of amino acid transport activity 3 (NPR3)	Nitrogen Permease regulator of amino acid transport activity 3	-	Family
B [auth Q]	PF05773	RWD domain (RWD)	RWD domain	This domain was identified in WD40 repeat proteins and Ring finger domain proteins [1]. The function of this domain is unknown. GCN2 is the alpha-subunit of the only translation initiation factor (eIF2 alpha) kinase that appears in all eukaryotes. It ...	This domain was identified in WD40 repeat proteins and Ring finger domain proteins [1]. The function of this domain is unknown. GCN2 is the alpha-subunit of the only translation initiation factor (eIF2 alpha) kinase that appears in all eukaryotes. Its function requires an interaction with GCN1 via the domain at its N-terminus, which is termed the RWD domain [1] after three major RWD-containing proteins: RING finger-containing proteins, WD-repeat-containing proteins, and yeast DEAD (DEXD)-like helicases. The structure forms an alpha + beta sandwich fold consisting of two layers: a four-stranded antiparallel beta-sheet, and three side-by-side alpha-helices [2].	Domain
B [auth Q]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
C [auth W]	PF12257	Vacuolar membrane-associated protein Iml1 (IML1)	Vacuolar membrane-associated protein Iml1	-	Family
D [auth S]	PF06218	Nitrogen permease regulator 2 (NPR2)	Nitrogen permease regulator 2	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth U]	Nitrogen permease regulator 3	-	pseudohyphal growth growth cellular process growth of unicellular organism as a thread of attached cells filamentous growth cell growth filamentous growth of a population of unicellular organisms catabolic process regulation of cellular component organization regulation of cellular process macroautophagy autophagy autophagosome organization cellular component biogenesis pseudohyphal growth growth cellular process growth of unicellular organism as a thread of attached cells filamentous growth cell growth filamentous growth of a population of unicellular organisms catabolic process regulation of cellular component organization regulation of cellular process macroautophagy autophagy autophagosome organization cellular component biogenesis cellular component organization cellular catabolic process cellular component assembly cellular component organization or biogenesis process utilizing autophagic mechanism regulation of biological process autophagosome assembly organelle assembly vacuole organization cellular metabolic process regulation of autophagosome assembly biological regulation regulation of vacuole organization regulation of cellular component biogenesis regulation of organelle organization organelle organization regulation of organelle assembly metabolic process cellular response to stimulus response to stimulus signaling negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process regulation of signal transduction intracellular signal transduction negative regulation of cell communication cell communication negative regulation of TORC1 signaling regulation of intracellular signal transduction negative regulation of TOR signaling negative regulation of cellular process signal transduction regulation of TORC1 signaling TOR signaling regulation of signaling regulation of TOR signaling negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus regulation of cell communication TORC1 signaling protein localization establishment of protein localization cellular localization nitrogen compound transport transport organic substance transport establishment of localization localization protein transport cellular macromolecule localization macromolecule localization small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction intracellular signaling cassette negative regulation of small GTPase mediated signal transduction response to nutrient levels cellular response to amino acid starvation cellular response to starvation cellular response to nutrient levels cellular response to stress response to stress response to amino acid starvation response to starvation sexual reproduction reproductive process meiotic cell cycle cell cycle positive regulation of autophagy positive regulation of biological process regulation of cellular metabolic process positive regulation of cellular metabolic process regulation of catabolic process regulation of autophagy positive regulation of catabolic process positive regulation of metabolic process regulation of cellular catabolic process positive regulation of cellular catabolic process regulation of metabolic process positive regulation of cellular process	protein-containing complex Seh1-associated complex GATOR1 complex vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane vacuole cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle bounding membrane of organelle organelle cytoplasm protein-containing complex Seh1-associated complex GATOR1 complex vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane vacuole cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle bounding membrane of organelle organelle cytoplasm organelle membrane
B [auth Q]	Maintenance of telomere capping protein 5	protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity	cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction positive regulation of TORC1 signaling intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction positive regulation of TOR signaling cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction positive regulation of TORC1 signaling intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction positive regulation of TOR signaling signal transduction regulation of TORC1 signaling positive regulation of cellular process TOR signaling regulation of biological process regulation of signaling regulation of TOR signaling biological regulation positive regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication cellular process TORC1 signaling positive regulation of signaling protein localization establishment of protein localization cellular localization nitrogen compound transport transport organic substance transport establishment of localization localization protein transport cellular macromolecule localization macromolecule localization response to nutrient levels cellular response to amino acid starvation cellular response to starvation cellular response to nutrient levels cellular response to stress response to stress response to amino acid starvation response to starvation	protein-containing complex Seh1-associated complex vacuolar membrane membrane-bounded organelle storage vacuole intracellular anatomical structure membrane lytic vacuole vacuole cellular anatomical entity intracellular membrane-bounded organelle fungal-type vacuole intracellular organelle lytic vacuole membrane protein-containing complex Seh1-associated complex vacuolar membrane membrane-bounded organelle storage vacuole intracellular anatomical structure membrane lytic vacuole vacuole cellular anatomical entity intracellular membrane-bounded organelle fungal-type vacuole intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle cytoplasm organelle membrane fungal-type vacuole membrane
C [auth W]	Vacuolar membrane-associated protein IML1	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity	cellular response to stimulus regulation of cellular process response to stimulus signaling negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process regulation of signal transduction intracellular signal transduction negative regulation of cell communication cell communication negative regulation of TOR signaling regulation of intracellular signal transduction negative regulation of cellular process cellular response to stimulus regulation of cellular process response to stimulus signaling negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process regulation of signal transduction intracellular signal transduction negative regulation of cell communication cell communication negative regulation of TOR signaling regulation of intracellular signal transduction negative regulation of cellular process signal transduction TOR signaling regulation of biological process regulation of signaling regulation of TOR signaling negative regulation of response to stimulus biological regulation negative regulation of signal transduction regulation of response to stimulus regulation of cell communication cellular process catabolic process regulation of cellular component organization macroautophagy autophagy autophagosome organization cellular component biogenesis cellular component organization cellular catabolic process cellular component assembly cellular component organization or biogenesis process utilizing autophagic mechanism autophagosome assembly organelle assembly vacuole organization cellular metabolic process regulation of autophagosome assembly regulation of vacuole organization regulation of cellular component biogenesis regulation of organelle organization organelle organization regulation of organelle assembly metabolic process negative regulation of TORC1 signaling regulation of TORC1 signaling TORC1 signaling protein localization establishment of protein localization cellular localization nitrogen compound transport transport organic substance transport establishment of localization localization protein transport cellular macromolecule localization macromolecule localization small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction intracellular signaling cassette negative regulation of small GTPase mediated signal transduction positive regulation of autophagy positive regulation of biological process regulation of cellular metabolic process positive regulation of cellular metabolic process regulation of catabolic process regulation of autophagy positive regulation of catabolic process positive regulation of metabolic process regulation of cellular catabolic process positive regulation of cellular catabolic process regulation of metabolic process positive regulation of cellular process	protein-containing complex Seh1-associated complex vacuolar membrane membrane-bounded organelle storage vacuole intracellular anatomical structure membrane lytic vacuole vacuole cellular anatomical entity intracellular membrane-bounded organelle fungal-type vacuole intracellular organelle lytic vacuole membrane protein-containing complex Seh1-associated complex vacuolar membrane membrane-bounded organelle storage vacuole intracellular anatomical structure membrane lytic vacuole vacuole cellular anatomical entity intracellular membrane-bounded organelle fungal-type vacuole intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle cytoplasm organelle membrane fungal-type vacuole membrane GATOR1 complex
D [auth S]	Nitrogen permease regulator 2	-	nitrogen compound transport organic anion transport carboxylic acid transport transport organic substance transport neutral amino acid transport proline transport establishment of localization organic acid transport amino acid transport localization response to stimulus response to chemical response to xenobiotic stimulus nitrogen compound transport organic anion transport carboxylic acid transport transport organic substance transport neutral amino acid transport proline transport establishment of localization organic acid transport amino acid transport localization response to stimulus response to chemical response to xenobiotic stimulus cellular response to stimulus TOR signaling regulation of biological process regulation of signaling regulation of cellular process regulation of TOR signaling signaling biological regulation regulation of signal transduction intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication cellular process regulation of TORC1 signaling signal transduction TORC1 signaling positive regulation of autophagy catabolic process cellular metabolic process autophagy positive regulation of biological process regulation of cellular metabolic process positive regulation of cellular metabolic process regulation of catabolic process regulation of autophagy cellular catabolic process positive regulation of catabolic process positive regulation of metabolic process regulation of cellular catabolic process positive regulation of cellular catabolic process metabolic process process utilizing autophagic mechanism regulation of metabolic process positive regulation of cellular process regulation of cellular component organization macroautophagy autophagosome organization cellular component biogenesis cellular component organization cellular component assembly cellular component organization or biogenesis autophagosome assembly organelle assembly vacuole organization regulation of autophagosome assembly regulation of vacuole organization regulation of cellular component biogenesis regulation of organelle organization organelle organization regulation of organelle assembly negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process negative regulation of cell communication negative regulation of TORC1 signaling negative regulation of TOR signaling negative regulation of cellular process negative regulation of response to stimulus negative regulation of signal transduction protein localization establishment of protein localization cellular localization protein transport cellular macromolecule localization macromolecule localization one-carbon compound transport amide transport urea transport	protein-containing complex Seh1-associated complex GATOR1 complex vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane vacuole cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle bounding membrane of organelle organelle cytoplasm protein-containing complex Seh1-associated complex GATOR1 complex vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane vacuole cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle bounding membrane of organelle organelle cytoplasm organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth U]	IPR005365	Nitrogen permease regulator 3	Family
B [auth Q]	IPR049566	WDR59/RTC1-like, RING zinc finger domain	Domain
B [auth Q]	IPR049567	GATOR complex protein WDR59-like	Family
B [auth Q]	IPR019775	WD40 repeat, conserved site	Conserved Site
B [auth Q]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
B [auth Q]	IPR001680	WD40 repeat	Repeat
B [auth Q]	IPR006575	RWD domain	Domain
B [auth Q]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
C [auth W]	IPR048255	Vacuolar membrane-associated protein Iml1, N-terminal domain	Domain
C [auth W]	IPR000591	DEP domain	Domain
C [auth W]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
C [auth W]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
C [auth W]	IPR027244	Vacuolar membrane-associated protein Iml1	Family
D [auth S]	IPR009348	Nitrogen permease regulator 2-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.