8AAY

Nudaurelia capensis omega virus maturation intermediate captured at pH5.6 (insect cell expressed VLPs): small class from symmetry expansion

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8104323	3000918	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8104323	3000918	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8104323	3000918	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8104323	3000918	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF03566	e8aayA2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03566	ECOD (1.6)
A	PF03566	e8aayA1	A: beta sandwiches	X: Insertion domain in tetravirus coat protein (From Topology)	H: Insertion domain in tetravirus coat protein (From Topology)	T: Insertion domain in tetravirus coat protein	F: PF03566	ECOD (1.6)
B	PF03566	e8aayB2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03566	ECOD (1.6)
B	PF03566	e8aayB1	A: beta sandwiches	X: Insertion domain in tetravirus coat protein (From Topology)	H: Insertion domain in tetravirus coat protein (From Topology)	T: Insertion domain in tetravirus coat protein	F: PF03566	ECOD (1.6)
C	PF03566	e8aayC2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03566	ECOD (1.6)
C	PF03566	e8aayC1	A: beta sandwiches	X: Insertion domain in tetravirus coat protein (From Topology)	H: Insertion domain in tetravirus coat protein (From Topology)	T: Insertion domain in tetravirus coat protein	F: PF03566	ECOD (1.6)
D	PF03566	e8aayD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF03566	ECOD (1.6)
D	PF03566	e8aayD2	A: beta sandwiches	X: Insertion domain in tetravirus coat protein (From Topology)	H: Insertion domain in tetravirus coat protein (From Topology)	T: Insertion domain in tetravirus coat protein	F: PF03566	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF03566	Peptidase family A21 (Peptidase_A21)	Peptidase family A21	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C, D	IPR005313	Peptidase N2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.