7ZCC | pdb_00007zcc

yxBC from Bacillus subtilis in complex with Mn and N-oxalylglycine (NOG)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyClavaminate synthase-like 8032702 3001848 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyClavaminate synthase-like 8032702 3001848 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyClavaminate synthase-like 8032702 3001848 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyClavaminate synthase-like 8032702 3001848 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AF_UNCLASSIFIEDe7zccA1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helix (From Topology)T: Double-stranded beta-helixF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe7zccB1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helix (From Topology)T: Double-stranded beta-helixF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe7zccC1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helix (From Topology)T: Double-stranded beta-helixF: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe7zccD1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helix (From Topology)T: Double-stranded beta-helixF: F_UNCLASSIFIEDECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.120.650 Mainly Beta Sandwich Jelly Rolls CupinCATH (utative)
B2.60.120.650 Mainly Beta Sandwich Jelly Rolls CupinCATH (utative)
C2.60.120.650 Mainly Beta Sandwich Jelly Rolls CupinCATH (utative)
D2.60.120.650 Mainly Beta Sandwich Jelly Rolls CupinCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF08007JmjC domain (JmjC_2)JmjC domainThis entry includes proteins with a JmjC domain that belong to the cupin superfamily, including Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 [1], Ribosomal oxygenase 1/2 [2,3], and 50S ribosomal protein L16 3-hydroxylase fro ...This entry includes proteins with a JmjC domain that belong to the cupin superfamily, including Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 [1], Ribosomal oxygenase 1/2 [2,3], and 50S ribosomal protein L16 3-hydroxylase from Escherichia coli [4,5]. Proteins are bifunctional, acting as histone lysine demethylases and ribosomal histidine hydroxylases.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Uncharacterized protein YxbC - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR003347JmjC domainDomain
A, B, C, D
IPR039994Histone lysine demethylase/ribosomal histidine hydroxylase NO66-likeFamily