7ZBT | pdb_00007zbt

Subtomogram averaging of Rubisco from native Halothiobacillus carboxysomes

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I [auth P]	SCOP2B Superfamily	RuBisCO, small subunit	8032402	3001622	SCOP2B (2022-06-29)
H [auth O]	SCOP2B Superfamily	RuBisCO, small subunit	8032402	3001622	SCOP2B (2022-06-29)
G [auth N]	SCOP2B Superfamily	RuBisCO, small subunit	8032402	3001622	SCOP2B (2022-06-29)
F [auth L]	SCOP2B Superfamily	RuBisCO, small subunit	8032402	3001622	SCOP2B (2022-06-29)
E [auth K]	SCOP2B Superfamily	RuBisCO, small subunit	8032402	3001622	SCOP2B (2022-06-29)
D [auth J]	SCOP2B Superfamily	RuBisCO, small subunit	8032402	3001622	SCOP2B (2022-06-29)
C [auth M]	SCOP2B Superfamily	RuBisCO, small subunit	8032402	3001622	SCOP2B (2022-06-29)
B [auth I]	SCOP2B Superfamily	RuBisCO, small subunit	8032402	3001622	SCOP2B (2022-06-29)
P [auth H]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
P [auth H]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
O [auth G]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
O [auth G]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
N [auth F]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
N [auth F]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
M [auth E]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
M [auth E]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
L [auth D]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
L [auth D]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
K [auth C]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
K [auth C]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
J [auth B]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
J [auth B]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RuBisCo, C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth P]	RuBisCO_small	e7zbtP1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
H [auth O]	RuBisCO_small	e7zbtO1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
G [auth N]	RuBisCO_small	e7zbtN1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
F [auth L]	RuBisCO_small	e7zbtL1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
E [auth K]	RuBisCO_small	e7zbtK1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
D [auth J]	RuBisCO_small	e7zbtJ1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
C [auth M]	RuBisCO_small	e7zbtM1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
B [auth I]	RuBisCO_small	e7zbtI1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (1.6)
P [auth H]	RuBisCO_large_N	e7zbtH2	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
P [auth H]	RuBisCO_large	e7zbtH1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
O [auth G]	RuBisCO_large_N	e7zbtG1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
O [auth G]	RuBisCO_large	e7zbtG2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
N [auth F]	RuBisCO_large_N	e7zbtF1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
N [auth F]	RuBisCO_large	e7zbtF2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
M [auth E]	RuBisCO_large_N	e7zbtE2	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
M [auth E]	RuBisCO_large	e7zbtE1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
L [auth D]	RuBisCO_large_N	e7zbtD1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
L [auth D]	RuBisCO_large	e7zbtD2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
K [auth C]	RuBisCO_large_N	e7zbtC2	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
K [auth C]	RuBisCO_large	e7zbtC1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
J [auth B]	RuBisCO_large_N	e7zbtB1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
J [auth B]	RuBisCO_large	e7zbtB2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)
A	RuBisCO_large_N	e7zbtA1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: RuBisCO_large_N	ECOD (1.6)
A	RuBisCO_large	e7zbtA2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: RuBisCO_large	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P [auth H]	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)
O [auth G]	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)
N [auth F]	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)
M [auth E]	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)
L [auth D]	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)
K [auth C]	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)
J [auth B]	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)
A	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], G [auth N], H [auth O], I [auth P]	PF00101	Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)	Ribulose bisphosphate carboxylase, small chain		Domain
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)	Ribulose bisphosphate carboxylase large chain, N-terminal domain	The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.	Domain
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)	Ribulose bisphosphate carboxylase large chain, catalytic domain	The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], G [auth N], H [auth O], I [auth P]	Ribulose bisphosphate carboxylase small subunit	ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	carbohydrate metabolic process biosynthetic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process metabolic process cellular process carbon fixation	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle carboxysome membraneless organelle intracellular membraneless organelle
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	Ribulose bisphosphate carboxylase large chain	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding monooxygenase activity oxidoreductase activity catalytic activity ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity carbon-carbon lyase activity	carbohydrate metabolic process biosynthetic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process metabolic process cellular process carbon fixation	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle carboxysome membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], G [auth N], H [auth O], I [auth P]	IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	Homologous Superfamily
B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], G [auth N], H [auth O], I [auth P]	IPR024681	Ribulose bisphosphate carboxylase, small subunit	Family
B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], G [auth N], H [auth O], I [auth P]	IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	Domain
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR033966	RuBisCO	Family
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain