7ZBT

Subtomogram averaging of Rubisco from native Halothiobacillus carboxysomes

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RuBisCo C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RuBisCO large subunit small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
J [auth B]	SCOP2B Superfamily	RuBisCO large subunit small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
J [auth B]	SCOP2B Superfamily	RuBisCo C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
K [auth C]	SCOP2B Superfamily	RuBisCo C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
K [auth C]	SCOP2B Superfamily	RuBisCO large subunit small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
L [auth D]	SCOP2B Superfamily	RuBisCo C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
L [auth D]	SCOP2B Superfamily	RuBisCO large subunit small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
M [auth E]	SCOP2B Superfamily	RuBisCo C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
M [auth E]	SCOP2B Superfamily	RuBisCO large subunit small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
N [auth F]	SCOP2B Superfamily	RuBisCo C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
N [auth F]	SCOP2B Superfamily	RuBisCO large subunit small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
O [auth G]	SCOP2B Superfamily	RuBisCo C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
O [auth G]	SCOP2B Superfamily	RuBisCO large subunit small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
P [auth H]	SCOP2B Superfamily	RuBisCO large subunit small (N-terminal) domain	8032399	3001258	SCOP2B (2022-06-29)
P [auth H]	SCOP2B Superfamily	RuBisCo C-terminal domain	8032398	3000552	SCOP2B (2022-06-29)
B [auth I]	SCOP2B Superfamily	RuBisCO small subunit	8032402	3001622	SCOP2B (2022-06-29)
C [auth M]	SCOP2B Superfamily	RuBisCO small subunit	8032402	3001622	SCOP2B (2022-06-29)
D [auth J]	SCOP2B Superfamily	RuBisCO small subunit	8032402	3001622	SCOP2B (2022-06-29)
E [auth K]	SCOP2B Superfamily	RuBisCO small subunit	8032402	3001622	SCOP2B (2022-06-29)
F [auth L]	SCOP2B Superfamily	RuBisCO small subunit	8032402	3001622	SCOP2B (2022-06-29)
G [auth N]	SCOP2B Superfamily	RuBisCO small subunit	8032402	3001622	SCOP2B (2022-06-29)
H [auth O]	SCOP2B Superfamily	RuBisCO small subunit	8032402	3001622	SCOP2B (2022-06-29)
I [auth P]	SCOP2B Superfamily	RuBisCO small subunit	8032402	3001622	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF02788	e7zbtA1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
A	PF00016	e7zbtA2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
J [auth B]	PF02788	e7zbtB1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
J [auth B]	PF00016	e7zbtB2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
K [auth C]	PF02788	e7zbtC2	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
K [auth C]	PF00016	e7zbtC1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
L [auth D]	PF02788	e7zbtD1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
L [auth D]	PF00016	e7zbtD2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
M [auth E]	PF02788	e7zbtE2	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
M [auth E]	PF00016	e7zbtE1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
N [auth F]	PF02788	e7zbtF1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
N [auth F]	PF00016	e7zbtF2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
O [auth G]	PF02788	e7zbtG1	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
O [auth G]	PF00016	e7zbtG2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
P [auth H]	PF02788	e7zbtH2	A: a+b two layers	X: Alpha-beta plaits	H: RuBisCO, large subunit, small (N-terminal) domain (From Topology)	T: RuBisCO, large subunit, small (N-terminal) domain	F: PF02788	ECOD (1.6)
P [auth H]	PF00016	e7zbtH1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00016	ECOD (1.6)
B [auth I]	PF00101	e7zbtI1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
C [auth M]	PF00101	e7zbtM1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
D [auth J]	PF00101	e7zbtJ1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
E [auth K]	PF00101	e7zbtK1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
F [auth L]	PF00101	e7zbtL1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
G [auth N]	PF00101	e7zbtN1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
H [auth O]	PF00101	e7zbtO1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)
I [auth P]	PF00101	e7zbtP1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit (From Topology)	T: RuBisCO, small subunit	F: PF00101	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)	Ribulose bisphosphate carboxylase large chain, N-terminal domain	The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.	Domain
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)	Ribulose bisphosphate carboxylase large chain, catalytic domain	The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.	Domain
B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], G [auth N], H [auth O], I [auth P]	PF00101	Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)	Ribulose bisphosphate carboxylase, small chain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	Ribulose bisphosphate carboxylase large chain	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding monooxygenase activity oxidoreductase activity catalytic activity ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity carbon-carbon lyase activity	carbohydrate metabolic process photosynthesis carbohydrate biosynthetic process cellular metabolic process photosynthesis, dark reaction primary metabolic process organic substance metabolic process biosynthetic process reductive pentose-phosphate cycle organic substance biosynthetic process metabolic process cellular process carbon fixation	intracellular organelle bacterial microcompartment intracellular anatomical structure organelle carboxysome intracellular non-membrane-bounded organelle cellular anatomical entity non-membrane-bounded organelle
B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], G [auth N], H [auth O], I [auth P]	Ribulose bisphosphate carboxylase small subunit	ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	carbohydrate metabolic process photosynthesis carbohydrate biosynthetic process cellular metabolic process photosynthesis, dark reaction primary metabolic process organic substance metabolic process biosynthetic process reductive pentose-phosphate cycle organic substance biosynthetic process metabolic process cellular process carbon fixation	intracellular organelle bacterial microcompartment intracellular anatomical structure organelle carboxysome intracellular non-membrane-bounded organelle cellular anatomical entity non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR033966	RuBisCO	Family
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily
A, J [auth B], K [auth C], L [auth D], M [auth E], A, J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain
B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], G [auth N], H [auth O], I [auth P]	IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	Homologous Superfamily
B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], G [auth N], H [auth O], I [auth P]	IPR024681	Ribulose bisphosphate carboxylase, small subunit	Family
B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], B [auth I], C [auth M], D [auth J], E [auth K], F [auth L], G [auth N], H [auth O], I [auth P]	IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	Domain