7YZD

Crystal structure of the zebrafish FoxH1 bound to the TGTTTACT site (fkh motif GTAAACA)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00250	Forkhead domain (Forkhead)	Forkhead domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Forkhead box protein H1	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity DNA-binding transcription repressor activity, RNA polymerase II-specific DNA-binding transcription repressor activity RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding SMAD binding protein binding	multicellular organismal process sensory organ development embryonic eye morphogenesis visual system development embryo development lens placode formation ectodermal placode formation embryonic camera-type eye development multicellular organism development eye morphogenesis anatomical structure development animal organ morphogenesis embryonic organ development sensory system development multicellular organismal process sensory organ development embryonic eye morphogenesis visual system development embryo development lens placode formation ectodermal placode formation embryonic camera-type eye development multicellular organism development eye morphogenesis anatomical structure development animal organ morphogenesis embryonic organ development sensory system development system development developmental process embryonic organ morphogenesis camera-type eye morphogenesis ectodermal placode morphogenesis eye development embryonic morphogenesis animal organ development embryonic camera-type eye morphogenesis anatomical structure morphogenesis sensory organ morphogenesis embryonic camera-type eye formation anatomical structure formation involved in morphogenesis camera-type eye development ectodermal placode development lens placode formation involved in camera-type eye formation gastrulation ameboidal-type cell migration cell migration cellular process cell motility cell migration involved in gastrulation heart development epithelium development embryonic heart tube left/right pattern formation tube development pattern specification process tissue development embryonic heart tube development regionalization circulatory system development left/right pattern formation dorsal/ventral pattern formation floor plate development neural tube development chordate embryonic development nervous system development embryo development ending in birth or egg hatching regulation of biosynthetic process regulation of biological process regulation of cellular process cellular biosynthetic process cellular metabolic process biological regulation regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process floor plate formation floor plate morphogenesis ventral midline development tissue morphogenesis central nervous system development specification of animal organ position prechordal plate formation cellular response to stimulus cell surface receptor protein serine/threonine kinase signaling pathway cellular response to growth factor stimulus response to stimulus signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway regulation of signal transduction cell communication cellular response to endogenous stimulus signal transduction BMP signaling pathway enzyme-linked receptor protein signaling pathway cellular response to BMP stimulus regulation of signaling regulation of BMP signaling pathway cell surface receptor signaling pathway response to endogenous stimulus regulation of cellular response to growth factor stimulus response to BMP regulation of response to stimulus regulation of cell communication transforming growth factor beta receptor superfamily signaling pathway response to growth factor heart morphogenesis tube morphogenesis embryonic heart tube morphogenesis epithelial tube morphogenesis morphogenesis of an epithelium mesoderm morphogenesis axial mesoderm morphogenesis mesoderm development axial mesoderm development mesodermal cell differentiation cellular developmental process axial mesodermal cell fate specification axial mesoderm formation cell differentiation mesodermal cell fate commitment mesoderm formation mesodermal cell fate specification formation of primary germ layer axial mesodermal cell differentiation cell fate specification cell fate commitment involved in formation of primary germ layer axial mesodermal cell fate commitment cell fate commitment vasculature development blood vessel development negative regulation of biological process RNA metabolic process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process negative regulation of cellular biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process heart looping determination of bilateral symmetry determination of left/right symmetry specification of symmetry determination of heart left/right asymmetry cellular response to transforming growth factor beta stimulus response to transforming growth factor beta transforming growth factor beta receptor signaling pathway notochord morphogenesis notochord formation notochord development head development brain morphogenesis brain development Spemann organizer formation Spemann organizer formation at the embryonic shield developmental induction hypothalamus development forebrain development diencephalon development limbic system development endoderm development endoderm formation mesendoderm development response to peptide response to chemical response to cytokine cellular response to cytokine stimulus somitogenesis embryonic pattern specification somite rostral/caudal axis specification anterior/posterior pattern specification segmentation embryonic axis specification anterior/posterior axis specification somite development axis specification	protein-containing complex transcription regulator complex RNA polymerase II transcription regulator complex membrane-bounded organelle intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle cellular anatomical entity activin responsive factor complex intracellular organelle organelle protein-DNA complex intracellular non-membrane-bounded organelle protein-containing complex transcription regulator complex RNA polymerase II transcription regulator complex membrane-bounded organelle intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle cellular anatomical entity activin responsive factor complex intracellular organelle organelle protein-DNA complex intracellular non-membrane-bounded organelle chromatin chromosome non-membrane-bounded organelle
B	DNA (5'-D(PAPGPAPTPTPGPTPTPTPAPCPTPGPAPGPA)-3')	-	-	-
C	DNA (5'-D(TPCPTPCPAPGPTPAPAPAPCPAPAPTPCPT)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001766	Fork head domain	Domain
A	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A	IPR047511	Forkhead box protein H1, forkhead domain	Domain
A	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A	IPR030456	Fork head domain conserved site 2	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.