7YZD | pdb_00007yzd

Crystal structure of the zebrafish FoxH1 bound to the TGTTTACT site (fkh motif GTAAACA)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00250	Forkhead domain (Forkhead)	Forkhead domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	DNA (5'-D(PAPGPAPTPTPGPTPTPTPAPCPTPGPAPGPA)-3')	-	-	-
C	DNA (5'-D(TPCPTPCPAPGPTPAPAPAPCPAPAPTPCPT)-3')	-	-	-
A	Forkhead box protein H1	DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription repressor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription repressor activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription repressor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription repressor activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding SMAD binding protein binding	embryonic organ morphogenesis developmental process multicellular organismal process embryonic morphogenesis animal organ development notochord morphogenesis notochord formation nervous system development embryo development multicellular organism development anatomical structure morphogenesis anatomical structure development anatomical structure formation involved in morphogenesis animal organ morphogenesis embryonic organ morphogenesis developmental process multicellular organismal process embryonic morphogenesis animal organ development notochord morphogenesis notochord formation nervous system development embryo development multicellular organism development anatomical structure morphogenesis anatomical structure development anatomical structure formation involved in morphogenesis animal organ morphogenesis embryonic organ development notochord development system development sensory organ development embryonic eye morphogenesis visual system development lens placode formation ectodermal placode formation embryonic camera-type eye development eye morphogenesis sensory system development camera-type eye morphogenesis ectodermal placode morphogenesis eye development embryonic camera-type eye morphogenesis sensory organ morphogenesis embryonic camera-type eye formation camera-type eye development ectodermal placode development lens placode formation involved in camera-type eye formation gastrulation ameboidal-type cell migration cell migration cellular process cell motility cell migration involved in gastrulation cellular developmental process cell differentiation heart development epithelium development embryonic heart tube left/right pattern formation tube development pattern specification process tissue development embryonic heart tube development regionalization circulatory system development left/right pattern formation head development brain morphogenesis brain development central nervous system development dorsal/ventral pattern formation floor plate development neural tube development chordate embryonic development embryo development ending in birth or egg hatching regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process floor plate formation floor plate morphogenesis ventral midline development tissue morphogenesis Spemann organizer formation Spemann organizer formation at the embryonic shield developmental induction hypothalamus development forebrain development diencephalon development limbic system development specification of animal organ position prechordal plate formation cellular response to stimulus cellular response to growth factor stimulus cell surface receptor protein serine/threonine kinase signaling pathway response to stimulus signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway regulation of signal transduction cell communication cellular response to endogenous stimulus signal transduction BMP signaling pathway enzyme-linked receptor protein signaling pathway cellular response to BMP stimulus regulation of signaling regulation of BMP signaling pathway cell surface receptor signaling pathway response to endogenous stimulus regulation of cellular response to growth factor stimulus response to BMP regulation of response to stimulus regulation of cell communication response to growth factor transforming growth factor beta receptor superfamily signaling pathway determination of bilateral symmetry determination of left/right symmetry specification of symmetry heart morphogenesis tube morphogenesis embryonic heart tube morphogenesis epithelial tube morphogenesis morphogenesis of an epithelium mesoderm morphogenesis axial mesoderm morphogenesis mesoderm development axial mesoderm development formation of primary germ layer endoderm development endoderm formation mesodermal cell differentiation axial mesodermal cell fate specification axial mesoderm formation mesodermal cell fate commitment mesoderm formation mesodermal cell fate specification axial mesodermal cell differentiation cell fate specification cell fate commitment involved in formation of primary germ layer axial mesodermal cell fate commitment cell fate commitment RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of DNA-templated transcription vasculature development blood vessel development mesendoderm development negative regulation of biological process negative regulation of RNA biosynthetic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process heart looping determination of heart left/right asymmetry response to peptide response to chemical response to cytokine cellular response to cytokine stimulus somitogenesis embryonic pattern specification somite rostral/caudal axis specification anterior/posterior pattern specification segmentation embryonic axis specification anterior/posterior axis specification somite development axis specification	protein-containing complex transcription regulator complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001766	Fork head domain	Domain
A	IPR030456	Fork head domain conserved site 2	Conserved Site
A	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A	IPR047511	Forkhead box protein H1, forkhead domain	Domain
A	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A	IPR052327	Activin-responsive transcriptional regulator	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.