7YOY | pdb_00007yoy

Cryo-EM structure of EBV gHgL-gp42 in complex with mAbs 3E8 and 5E3 (localized refinement)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth C]SCOP2B SuperfamilyC-type lectin-like 8040257 3001261 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth C]V-sete7yoyC01 A: a/b three-layered sandwichesX: Rossmann-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (v294.1)
B [auth E]V-sete7yoyE01 A: a/b three-layered sandwichesX: Rossmann-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (v294.1)
C [auth F]V-sete7yoyF01 A: a/b three-layered sandwichesX: Rossmann-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (v294.1)
D [auth I]V-sete7yoyI01 A: a/b three-layered sandwichesX: Rossmann-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (v294.1)
E [auth J]V-sete7yoyJ01 A: a/b three-layered sandwichesX: Rossmann-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (v294.1)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth E]Heavy ChainIGHV1 -soluble gp42SAbDab (2026-04-10)
C [auth F]Heavy ChainIGHV1 -soluble gp42SAbDab (2026-04-10)
D [auth I]Light ChainIGKV1 Kappasoluble gp42SAbDab (2026-04-10)
E [auth J]Light ChainIGKV1 Kappasoluble gp42SAbDab (2026-04-10)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C]Soluble gp42 -
B [auth E]5E3 heavy chain---
C [auth F]3E8 heavy chain---
D [auth I]5E3 light chain---
E [auth J]3E8 light chain---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth C]IPR016186C-type lectin-like/link domain superfamilyHomologous Superfamily
A [auth C]IPR016187C-type lectin foldHomologous Superfamily