Cryo-EM structure of EBV gHgL-gp42 in complex with mAbs 3E8 and 5E3 (localized refinement)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A [auth C] | SCOP2B Superfamily | C-type lectin-like | 8040257 | 3001261 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth C] | V-set | e7yoyC01 | A: beta barrels | X: Fe-binding domain in prismane-like proteins | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (v294.2) |
| B [auth E] | V-set | e7yoyE01 | A: beta barrels | X: Fe-binding domain in prismane-like proteins | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (v294.2) |
| C [auth F] | V-set | e7yoyF01 | A: beta barrels | X: Fe-binding domain in prismane-like proteins | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (v294.2) |
| D [auth I] | V-set | e7yoyI01 | A: beta barrels | X: Fe-binding domain in prismane-like proteins | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (v294.2) |
| E [auth J] | V-set | e7yoyJ01 | A: beta barrels | X: Fe-binding domain in prismane-like proteins | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (v294.2) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| B [auth E] | Heavy Chain | IGHV1 | - | soluble gp42 | SAbDab (2026-05-08) |
| C [auth F] | Heavy Chain | IGHV1 | - | soluble gp42 | SAbDab (2026-05-08) |
| D [auth I] | Light Chain | IGKV1 | Kappa | soluble gp42 | SAbDab (2026-05-08) |
| E [auth J] | Light Chain | IGKV1 | Kappa | soluble gp42 | SAbDab (2026-05-08) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| A [auth C] | Soluble gp42 | - | ||
| B [auth E] | 5E3 heavy chain | - | - | - |
| C [auth F] | 3E8 heavy chain | - | - | - |
| D [auth I] | 5E3 light chain | - | - | - |
| E [auth J] | 3E8 light chain | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A [auth C] | IPR016186 | C-type lectin-like/link domain superfamily | Homologous Superfamily |
| A [auth C] | IPR016187 | C-type lectin fold | Homologous Superfamily |
