7VY2 | pdb_00007vy2

STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES DIMER

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
FA [auth X]	SCOP2 Family	PufX membrane protein	8107139	4005146	SCOP2 (2022-06-29)
FA [auth X]	SCOP2 Superfamily	PufX membrane protein-like	8107140	3002563	SCOP2 (2022-06-29)
I [auth G]	SCOP2 Family	Light-harvesting complex subunits	8107143	4003043	SCOP2 (2022-06-29)
I [auth G]	SCOP2 Superfamily	Light-harvesting complex subunits	8107144	3000199	SCOP2 (2022-06-29)
IA [auth m]	SCOP2 Family	Bacterial photosystem II reaction centre, L and M subunits	8107145	4002035	SCOP2 (2022-06-29)
IA [auth m]	SCOP2 Superfamily	Bacterial photosystem II reaction centre, L and M subunits	8107146	3000736	SCOP2 (2022-06-29)
HA [auth l]	SCOP2 Family	Bacterial photosystem II reaction centre, L and M subunits	8107141	4002035	SCOP2 (2022-06-29)
HA [auth l]	SCOP2 Superfamily	Bacterial photosystem II reaction centre, L and M subunits	8107142	3000736	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
FA [auth X]	zf-Tim10_DDP	e7vy2X1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
MB [auth x]	zf-Tim10_DDP	e7vy2x1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
AA [auth 4]	zf-Tim10_DDP	e7vy241	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
BB [auth w]	zf-Tim10_DDP	e7vy2w1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
CA [auth 6]	zf-Tim10_DDP	e7vy261	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
DB [auth z]	zf-Tim10_DDP	e7vy2z1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
E [auth B]	zf-Tim10_DDP	e7vy2B1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
EA [auth 8]	zf-Tim10_DDP	e7vy281	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
FB [auth 02]	zf-Tim10_DDP	e7vy2021	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
G [auth E]	zf-Tim10_DDP	e7vy2E1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
HB [auth 04]	zf-Tim10_DDP	e7vy2041	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
I [auth G]	zf-Tim10_DDP	e7vy2G1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
JB [auth 06]	zf-Tim10_DDP	e7vy2061	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
K [auth J]	zf-Tim10_DDP	e7vy2J1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
LA [auth b]	zf-Tim10_DDP	e7vy2b1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
LB [auth 08]	zf-Tim10_DDP	e7vy2081	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
M [auth N]	zf-Tim10_DDP	e7vy2N1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
NA [auth e]	zf-Tim10_DDP	e7vy2e1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
O [auth P]	zf-Tim10_DDP	e7vy2P1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
PA [auth g]	zf-Tim10_DDP	e7vy2g1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
Q [auth R]	zf-Tim10_DDP	e7vy2R1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
RA [auth j]	zf-Tim10_DDP	e7vy2j1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
S [auth T]	zf-Tim10_DDP	e7vy2T1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
TA [auth n]	zf-Tim10_DDP	e7vy2n1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
U [auth W]	zf-Tim10_DDP	e7vy2W1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
VA [auth p]	zf-Tim10_DDP	e7vy2p1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
W [auth Z]	zf-Tim10_DDP	e7vy2Z1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
XA [auth r]	zf-Tim10_DDP	e7vy2r1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
Y [auth 2]	zf-Tim10_DDP	e7vy221	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
ZA [auth t]	zf-Tim10_DDP	e7vy2t1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
AB [auth v]	zf-Tim10_DDP	e7vy2v1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
BA [auth 5]	zf-Tim10_DDP	e7vy251	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
CB [auth y]	zf-Tim10_DDP	e7vy2y1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
D [auth A]	zf-Tim10_DDP	e7vy2A1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
DA [auth 7]	zf-Tim10_DDP	e7vy271	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
EB [auth 01]	zf-Tim10_DDP	e7vy2011	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
F [auth D]	zf-Tim10_DDP	e7vy2D1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
GB [auth 03]	zf-Tim10_DDP	e7vy2031	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
H [auth F]	zf-Tim10_DDP	e7vy2F1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
IB [auth 05]	zf-Tim10_DDP	e7vy2051	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
J [auth I]	zf-Tim10_DDP	e7vy2I1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
KA [auth a]	zf-Tim10_DDP	e7vy2a1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
KB [auth 07]	zf-Tim10_DDP	e7vy2071	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
L [auth K]	zf-Tim10_DDP	e7vy2K1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
MA [auth d]	zf-Tim10_DDP	e7vy2d1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
N [auth O]	zf-Tim10_DDP	e7vy2O1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
OA [auth f]	zf-Tim10_DDP	e7vy2f1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
P [auth Q]	zf-Tim10_DDP	e7vy2Q1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
QA [auth i]	zf-Tim10_DDP	e7vy2i1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
R [auth S]	zf-Tim10_DDP	e7vy2S1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
SA [auth k]	zf-Tim10_DDP	e7vy2k1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
T [auth V]	zf-Tim10_DDP	e7vy2V1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
UA [auth o]	zf-Tim10_DDP	e7vy2o1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
WA [auth q]	zf-Tim10_DDP	e7vy2q1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
X [auth 1]	zf-Tim10_DDP	e7vy211	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
YA [auth s]	zf-Tim10_DDP	e7vy2s1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
Z [auth 3]	zf-Tim10_DDP	e7vy231	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
V [auth Y]	zf-Tim10_DDP	e7vy2Y1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
C [auth H]	zf-Tim10_DDP	e7vy2H1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
JA [auth h]	zf-Tim10_DDP	e7vy2h1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
B [auth M]	zf-Tim10_DDP	e7vy2M1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
IA [auth m]	zf-Tim10_DDP	e7vy2m1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
A [auth L]	zf-Tim10_DDP	e7vy2L1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)
HA [auth l]	zf-Tim10_DDP	e7vy2l1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: zf-Tim10_DDP	ECOD (v294.2)

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
AB [auth v], BA [auth 5], CB [auth y], D [auth A], DA [auth 7], AB [auth v], BA [auth 5], CB [auth y], D [auth A], DA [auth 7], EB [auth 01], F [auth D], GB [auth 03], H [auth F], IB [auth 05], J [auth I], KA [auth a], KB [auth 07], L [auth K], MA [auth d], N [auth O], OA [auth f], P [auth Q], QA [auth i], R [auth S], SA [auth k], T [auth V], UA [auth o], V [auth Y], WA [auth q], X [auth 1], YA [auth s], Z [auth 3]	FME	Parent Component: MET : AA0021 , AA0566 : N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.