CryoEM structure of DDB1-VprBP-Vpr-UNG2(94-313) complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| F | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | WD40 repeat-like | 8052531 | 3001694 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | WD40 repeat-like | 8052531 | 3001694 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Uracil-DNA glycosylase-like | 8042482 | 3001106 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Uracil-DNA glycosylase-like | 8042482 | 3001106 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F | CPSF_A_N | e7v7cF3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: CPSF_A_N | ECOD (1.6) |
| F | MMS1_N_C | e7v7cF1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_C | ECOD (1.6) |
| F | MMS1_N_N | e7v7cF2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_N | ECOD (1.6) |
| F | CPSF_A_C | e7v7cF4 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: CPSF_A_C | ECOD (1.6) |
| B | CPSF_A_N | e7v7cB1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: CPSF_A_N | ECOD (1.6) |
| B | MMS1_N_C | e7v7cB3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_C | ECOD (1.6) |
| B | MMS1_N_N | e7v7cB4 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_N | ECOD (1.6) |
| B | CPSF_A_C | e7v7cB2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: CPSF_A_C | ECOD (1.6) |
| G | VPR | e7v7cG1 | A: alpha bundles | X: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | H: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | T: Viral accessory protein x (Vpx) / viral protein r (Vpr) | F: VPR | ECOD (1.6) |
| C | VPR | e7v7cC1 | A: alpha bundles | X: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | H: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | T: Viral accessory protein x (Vpx) / viral protein r (Vpr) | F: VPR | ECOD (1.6) |
| H | UDG | e7v7cH1 | A: a/b three-layered sandwiches | X: Uracil-DNA glycosylase-like (From Topology) | H: Uracil-DNA glycosylase-like (From Topology) | T: Uracil-DNA glycosylase-like | F: UDG | ECOD (1.6) |
| D | UDG | e7v7cD1 | A: a/b three-layered sandwiches | X: Uracil-DNA glycosylase-like (From Topology) | H: Uracil-DNA glycosylase-like (From Topology) | T: Uracil-DNA glycosylase-like | F: UDG | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| F | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (utative) |
| B | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF10433 | RSE1/DDB1/CPSF1 first beta-propeller (Beta-prop_RSE1_1st) | RSE1/DDB1/CPSF1 first beta-propeller | - | Repeat | |
| PF03178 | CPSF A subunit region (CPSF_A) | CPSF A subunit region | - | Repeat | |
| PF00522 | VPR/VPX protein (VPR) | VPR/VPX protein | - | Family | |
| PF03167 | Uracil DNA glycosylase superfamily (UDG) | Uracil DNA glycosylase superfamily | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR016024 | Armadillo-type fold | Homologous Superfamily | |
| IPR011989 | Armadillo-like helical | Homologous Superfamily | |
| IPR006594 | LIS1 homology motif | Conserved Site | |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
| IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
| IPR033270 | VPRBP/DCAF1 family | Family | |
| IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
| IPR004871 | RSE1/DDB1/CPSF1, C-terminal | Domain | |
| IPR050358 | RSE1/DDB1/CPSF1 | Family | |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
| IPR018846 | RSE1/DDB1/CPSF1, first beta-propeller | Domain | |
| IPR000012 | Retroviral VpR/VpX protein | Family | |
| IPR036895 | Uracil-DNA glycosylase-like domain superfamily | Homologous Superfamily | |
| IPR002043 | Uracil-DNA glycosylase family 1 | Family | |
| IPR018085 | Uracil-DNA glycosylase, active site | Active Site | |
| IPR005122 | Uracil-DNA glycosylase-like | Domain |














