7TAG

Cryo-EM structure of Human Enterovirus D68 US/MO/14-18947 strain virion in complex with pleconaril


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth C]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like8068016 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF22663e7tagA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22663ECOD (1.6)
B [auth C]PF00073e7tagC1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00073ECOD (1.6)
C [auth B]PF00073e7tagB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00073ECOD (1.6)
DPF02226e7tagD1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF02226ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
B [auth C]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
C [auth B]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
PF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
viral protein 1
B [auth C]viral protein 3
C [auth B]viral protein 2
viral protein 4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
B [auth C]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth C]IPR002527Picornavirus 2B proteinDomain
B [auth C]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth C]IPR003593AAA+ ATPase domainDomain
B [auth C]IPR003138Picornavirus coat protein VP4Family
B [auth C]IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth C]IPR001676Picornavirus capsidDomain
B [auth C]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth C]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth C]IPR000081Peptidase C3, picornavirus core protein 2ADomain
B [auth C]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth C]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth C]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth C]IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth C]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth C]IPR014838Poliovirus 3A protein-likeDomain
B [auth C]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
B [auth C]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B [auth C]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth C]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
C [auth B]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth B]IPR002527Picornavirus 2B proteinDomain
C [auth B]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth B]IPR003593AAA+ ATPase domainDomain
C [auth B]IPR003138Picornavirus coat protein VP4Family
C [auth B]IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth B]IPR001676Picornavirus capsidDomain
C [auth B]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth B]IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth B]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth B]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth B]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth B]IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth B]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth B]IPR014838Poliovirus 3A protein-likeDomain
C [auth B]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth B]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth B]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth B]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain