7SCC | pdb_00007scc

T-cylinder of Synechocystis PCC 6803 Phycobilisome, complex with OCP - local refinement

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth BE]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
X [auth BB]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
V [auth AZ]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
T [auth AX]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
L [auth AM]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
J [auth AK]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
H [auth AI]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
F [auth AF]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
DA [auth BI]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
D [auth AD]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
BA [auth BG]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
B [auth AB]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P [auth AT]	NTF2	e7sccAT1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: NTF2	ECOD (1.6)
O [auth AS]	Carot_N	e7sccAS1	A: alpha arrays	X: Orange carotenoid protein, N-terminal domain (From Topology)	H: Orange carotenoid protein, N-terminal domain (From Topology)	T: Orange carotenoid protein, N-terminal domain	F: Carot_N	ECOD (1.6)
O [auth AS]	NTF2	e7sccAS2	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: NTF2	ECOD (1.6)
HA [auth BP]	Carot_N	e7sccBP2	A: alpha arrays	X: Orange carotenoid protein, N-terminal domain (From Topology)	H: Orange carotenoid protein, N-terminal domain (From Topology)	T: Orange carotenoid protein, N-terminal domain	F: Carot_N	ECOD (1.6)
HA [auth BP]	NTF2	e7sccBP1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: NTF2	ECOD (1.6)
GA [auth BO]	NTF2	e7sccBO1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: NTF2	ECOD (1.6)
N [auth AQ]	PBS_linker_poly	e7sccAQ1	A: alpha arrays	X: PBS linker domain of phycobilisome linker polypeptide (From Topology)	H: PBS linker domain of phycobilisome linker polypeptide (From Topology)	T: PBS linker domain of phycobilisome linker polypeptide	F: PBS_linker_poly	ECOD (1.6)
FA [auth BM]	PBS_linker_poly	e7sccBM1	A: alpha arrays	X: PBS linker domain of phycobilisome linker polypeptide (From Topology)	H: PBS linker domain of phycobilisome linker polypeptide (From Topology)	T: PBS linker domain of phycobilisome linker polypeptide	F: PBS_linker_poly	ECOD (1.6)
M [auth AO]	CpcD	e7sccAO1	A: a+b two layers	X: Allophycocyanin linker chain (domain) (From Topology)	H: Allophycocyanin linker chain (domain) (From Topology)	T: Allophycocyanin linker chain (domain)	F: CpcD	ECOD (1.6)
EA [auth BK]	CpcD	e7sccBK1	A: a+b two layers	X: Allophycocyanin linker chain (domain) (From Topology)	H: Allophycocyanin linker chain (domain) (From Topology)	T: Allophycocyanin linker chain (domain)	F: CpcD	ECOD (1.6)
Z [auth BE]	Phycobilisome	e7sccBE1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
X [auth BB]	Phycobilisome	e7sccBB1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
V [auth AZ]	Phycobilisome	e7sccAZ1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
T [auth AX]	Phycobilisome	e7sccAX1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
L [auth AM]	Phycobilisome	e7sccAM1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
J [auth AK]	Phycobilisome	e7sccAK1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
H [auth AI]	Phycobilisome	e7sccAI1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
F [auth AF]	Phycobilisome	e7sccAF1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
DA [auth BI]	Phycobilisome	e7sccBI1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
D [auth AD]	Phycobilisome	e7sccAD1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
BA [auth BG]	Phycobilisome	e7sccBG1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
B [auth AB]	Phycobilisome	e7sccAB1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
Y [auth BD]	Phycobilisome	e7sccBD1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
W [auth BA]	Phycobilisome	e7sccBA1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
U [auth AY]	Phycobilisome	e7sccAY1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
S [auth AW]	Phycobilisome	e7sccAW1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
K [auth AL]	Phycobilisome	e7sccAL1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
I [auth AJ]	Phycobilisome	e7sccAJ1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
G [auth AH]	Phycobilisome	e7sccAH1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
E [auth AE]	Phycobilisome	e7sccAE1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
CA [auth BH]	Phycobilisome	e7sccBH1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
C [auth AC]	Phycobilisome	e7sccAC1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
AA [auth BF]	Phycobilisome	e7sccBF1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
A [auth AA]	Phycobilisome	e7sccAA1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
GA [auth BO], HA [auth BP], O [auth AS], P [auth AT]	PF02136	Nuclear transport factor 2 (NTF2) domain (NTF2)	Nuclear transport factor 2 (NTF2) domain	This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins.	Domain
FA [auth BM], N [auth AQ]	PF00427	Phycobilisome Linker polypeptide (PBS_linker_poly)	Phycobilisome Linker polypeptide	-	Family
EA [auth BK], M [auth AO]	PF01383	CpcD/allophycocyanin linker domain (CpcD)	CpcD/allophycocyanin linker domain		Domain
B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], H [auth AI], J [auth AK], L [auth AM], T [auth AX], V [auth AZ], X [auth BB], Z [auth BE]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], G [auth AH], I [auth AJ], K [auth AL], S [auth AW], U [auth AY], W [auth BA], Y [auth BD]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
IA [auth BQ], JA [auth BR], Q [auth AU], R [auth AV]	Phycobilisome rod-core linker polypeptide CpcG	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
GA [auth BO], HA [auth BP], O [auth AS], P [auth AT]	Orange carotenoid-binding protein	molecular transducer activity photoreceptor activity signaling receptor activity ion binding binding anion binding chloride ion binding small molecule binding	detection of light stimulus response to light stimulus detection of external stimulus response to stimulus response to external stimulus detection of abiotic stimulus detection of stimulus light absorption response to abiotic stimulus response to radiation cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
FA [auth BM], N [auth AQ]	Phycobiliprotein ApcE	lyase activity catalytic activity	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
EA [auth BK], M [auth AO]	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], H [auth AI], J [auth AK], L [auth AM], T [auth AX], V [auth AZ], X [auth BB], Z [auth BE]	Allophycocyanin beta chain	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], G [auth AH], I [auth AJ], K [auth AL], S [auth AW], U [auth AY], W [auth BA], Y [auth BD]	Allophycocyanin alpha chain	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
IA [auth BQ], JA [auth BR], Q [auth AU], R [auth AV]	IPR016470	Phycobilisome linker protein	Family
IA [auth BQ], JA [auth BR], Q [auth AU], R [auth AV]	IPR001297	Phycobilisome linker domain	Domain
IA [auth BQ], JA [auth BR], Q [auth AU], R [auth AV]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
GA [auth BO], HA [auth BP], O [auth AS], P [auth AT]	IPR015233	Orange carotenoid-binding protein, N-terminal	Domain
GA [auth BO], HA [auth BP], O [auth AS], P [auth AT]	IPR032710	NTF2-like domain superfamily	Homologous Superfamily
GA [auth BO], HA [auth BP], O [auth AS], P [auth AT]	IPR002075	Nuclear transport factor 2 domain	Domain
GA [auth BO], HA [auth BP], O [auth AS], P [auth AT]	IPR036917	Orange carotenoid-binding protein, N-terminal domain superfamily	Homologous Superfamily
FA [auth BM], N [auth AQ]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
FA [auth BM], N [auth AQ]	IPR001297	Phycobilisome linker domain	Domain
FA [auth BM], N [auth AQ]	IPR009050	Globin-like superfamily	Homologous Superfamily
FA [auth BM], N [auth AQ]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
FA [auth BM], N [auth AQ]	IPR012128	Phycobilisome, alpha/beta subunit	Family
EA [auth BK], M [auth AO]	IPR011064	Allophycocyanin linker chain	Homologous Superfamily
EA [auth BK], M [auth AO]	IPR011134	Allophycocyanin linker protein	Family
EA [auth BK], M [auth AO]	IPR008213	CpcD-like domain	Domain
B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], H [auth AI], J [auth AK], L [auth AM], T [auth AX], V [auth AZ], X [auth BB], Z [auth BE]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], H [auth AI], J [auth AK], L [auth AM], T [auth AX], V [auth AZ], X [auth BB], Z [auth BE]	IPR006245	Allophycocyanin, beta subunit	Family
B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], H [auth AI], J [auth AK], L [auth AM], T [auth AX], V [auth AZ], X [auth BB], Z [auth BE]	IPR009050	Globin-like superfamily	Homologous Superfamily
B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], H [auth AI], J [auth AK], L [auth AM], T [auth AX], V [auth AZ], X [auth BB], Z [auth BE]	IPR012128	Phycobilisome, alpha/beta subunit	Family
A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], G [auth AH], I [auth AJ], K [auth AL], S [auth AW], U [auth AY], W [auth BA], Y [auth BD]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], G [auth AH], I [auth AJ], K [auth AL], S [auth AW], U [auth AY], W [auth BA], Y [auth BD]	IPR009050	Globin-like superfamily	Homologous Superfamily
A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], G [auth AH], I [auth AJ], K [auth AL], S [auth AW], U [auth AY], W [auth BA], Y [auth BD]	IPR012128	Phycobilisome, alpha/beta subunit	Family