7SCC
T-cylinder of Synechocystis PCC 6803 Phycobilisome, complex with OCP - local refinement
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth AB] | SCOP2B Superfamily | Globin-like | 8099078 | 3000554 | SCOP2B (2022-06-29) |
D [auth AD] | SCOP2B Superfamily | Globin-like | 8099078 | 3000554 | SCOP2B (2022-06-29) |
DA [auth BI] | SCOP2B Superfamily | Globin-like | 8099078 | 3000554 | SCOP2B (2022-06-29) |
F [auth AF] | SCOP2B Superfamily | Globin-like | 8099078 | 3000554 | SCOP2B (2022-06-29) |
J [auth AK] | SCOP2B Superfamily | Globin-like | 8099078 | 3000554 | SCOP2B (2022-06-29) |
L [auth AM] | SCOP2B Superfamily | Globin-like | 8099078 | 3000554 | SCOP2B (2022-06-29) |
T [auth AX] | SCOP2B Superfamily | Globin-like | 8099078 | 3000554 | SCOP2B (2022-06-29) |
X [auth BB] | SCOP2B Superfamily | Globin-like | 8099078 | 3000554 | SCOP2B (2022-06-29) |
Z [auth BE] | SCOP2B Superfamily | Globin-like | 8099078 | 3000554 | SCOP2B (2022-06-29) |
BA [auth BG] | SCOP2B Superfamily | Globin-like | 8099078 | 3000554 | SCOP2B (2022-06-29) |
H [auth AI] | SCOP2B Superfamily | Globin-like | 8099078 | 3000554 | SCOP2B (2022-06-29) |
V [auth AZ] | SCOP2B Superfamily | Globin-like | 8099078 | 3000554 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth AA] | PF00502 | e7sccAA1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
AA [auth BF] | PF00502 | e7sccBF1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
CA [auth BH] | PF00502 | e7sccBH1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
E [auth AE] | PF00502 | e7sccAE1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
G [auth AH] | PF00502 | e7sccAH1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
S [auth AW] | PF00502 | e7sccAW1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
U [auth AY] | PF00502 | e7sccAY1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
W [auth BA] | PF00502 | e7sccBA1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
C [auth AC] | PF00502 | e7sccAC1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
I [auth AJ] | PF00502 | e7sccAJ1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
K [auth AL] | PF00502 | e7sccAL1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
Y [auth BD] | PF00502 | e7sccBD1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
B [auth AB] | PF00502 | e7sccAB1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
D [auth AD] | PF00502 | e7sccAD1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
DA [auth BI] | PF00502 | e7sccBI1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
F [auth AF] | PF00502 | e7sccAF1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
J [auth AK] | PF00502 | e7sccAK1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
L [auth AM] | PF00502 | e7sccAM1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
T [auth AX] | PF00502 | e7sccAX1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
X [auth BB] | PF00502 | e7sccBB1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
Z [auth BE] | PF00502 | e7sccBE1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
BA [auth BG] | PF00502 | e7sccBG1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
H [auth AI] | PF00502 | e7sccAI1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
V [auth AZ] | PF00502 | e7sccAZ1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00502 | ECOD (1.6) |
M [auth AO] | PF01383 | e7sccAO1 | A: a+b two layers | X: Allophycocyanin linker chain (domain) (From Topology) | H: Allophycocyanin linker chain (domain) (From Topology) | T: Allophycocyanin linker chain (domain) | F: PF01383 | ECOD (1.6) |
EA [auth BK] | PF01383 | e7sccBK1 | A: a+b two layers | X: Allophycocyanin linker chain (domain) (From Topology) | H: Allophycocyanin linker chain (domain) (From Topology) | T: Allophycocyanin linker chain (domain) | F: PF01383 | ECOD (1.6) |
FA [auth BM] | PF00427 | e7sccBM1 | A: alpha arrays | X: PBS linker domain of phycobilisome linker polypeptide (From Topology) | H: PBS linker domain of phycobilisome linker polypeptide (From Topology) | T: PBS linker domain of phycobilisome linker polypeptide | F: PF00427 | ECOD (1.6) |
N [auth AQ] | PF00427 | e7sccAQ1 | A: alpha arrays | X: PBS linker domain of phycobilisome linker polypeptide (From Topology) | H: PBS linker domain of phycobilisome linker polypeptide (From Topology) | T: PBS linker domain of phycobilisome linker polypeptide | F: PF00427 | ECOD (1.6) |
GA [auth BO] | PF02136 | e7sccBO1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: PF02136 | ECOD (1.6) |
P [auth AT] | PF02136 | e7sccAT1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: PF02136 | ECOD (1.6) |
HA [auth BP] | PF09150 | e7sccBP2 | A: alpha arrays | X: Orange carotenoid protein, N-terminal domain (From Topology) | H: Orange carotenoid protein, N-terminal domain (From Topology) | T: Orange carotenoid protein, N-terminal domain | F: PF09150 | ECOD (1.6) |
HA [auth BP] | PF02136 | e7sccBP1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: PF02136 | ECOD (1.6) |
O [auth AS] | PF09150 | e7sccAS1 | A: alpha arrays | X: Orange carotenoid protein, N-terminal domain (From Topology) | H: Orange carotenoid protein, N-terminal domain (From Topology) | T: Orange carotenoid protein, N-terminal domain | F: PF09150 | ECOD (1.6) |
O [auth AS] | PF02136 | e7sccAS2 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: PF02136 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00502 | Phycobilisome protein (Phycobilisome) | Phycobilisome protein | - | Domain | |
PF00502 | Phycobilisome protein (Phycobilisome) | Phycobilisome protein | - | Domain | |
EA [auth BK], M [auth AO] | PF01383 | CpcD/allophycocyanin linker domain (CpcD) | CpcD/allophycocyanin linker domain | - | Domain |
FA [auth BM], N [auth AQ] | PF00427 | Phycobilisome Linker polypeptide (PBS_linker_poly) | Phycobilisome Linker polypeptide | - | Family |
GA [auth BO], HA [auth BP], O [auth AS], P [auth AT] | PF09150 | Orange carotenoid protein, N-terminal (Carot_N) | Orange carotenoid protein, N-terminal | Members of this family adopt an alpha-helical structure consisting of two four-helix bundles. They are predominantly found in prokaryotic orange carotenoid protein, and carotenoid binding proteins [1]. | Domain |
GA [auth BO], HA [auth BP], O [auth AS], P [auth AT] | PF02136 | Nuclear transport factor 2 (NTF2) domain (NTF2) | Nuclear transport factor 2 (NTF2) domain | This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins. | Domain |