7SCC | pdb_00007scc

T-cylinder of Synechocystis PCC 6803 Phycobilisome, complex with OCP - local refinement

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth AB]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
BA [auth BG]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
D [auth AD]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
DA [auth BI]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
F [auth AF]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
H [auth AI]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
J [auth AK]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
L [auth AM]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
T [auth AX]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
V [auth AZ]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
X [auth BB]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
Z [auth BE]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth AA]	ABC_membrane	e7sccAA1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
AA [auth BF]	ABC_membrane	e7sccBF1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
C [auth AC]	ABC_membrane	e7sccAC1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
CA [auth BH]	ABC_membrane	e7sccBH1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
E [auth AE]	ABC_membrane	e7sccAE1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
G [auth AH]	ABC_membrane	e7sccAH1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
I [auth AJ]	ABC_membrane	e7sccAJ1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
K [auth AL]	ABC_membrane	e7sccAL1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
S [auth AW]	ABC_membrane	e7sccAW1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
U [auth AY]	ABC_membrane	e7sccAY1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
W [auth BA]	ABC_membrane	e7sccBA1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
Y [auth BD]	ABC_membrane	e7sccBD1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
B [auth AB]	ABC_membrane	e7sccAB1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
BA [auth BG]	ABC_membrane	e7sccBG1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
D [auth AD]	ABC_membrane	e7sccAD1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
DA [auth BI]	ABC_membrane	e7sccBI1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
F [auth AF]	ABC_membrane	e7sccAF1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
H [auth AI]	ABC_membrane	e7sccAI1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
J [auth AK]	ABC_membrane	e7sccAK1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
L [auth AM]	ABC_membrane	e7sccAM1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
T [auth AX]	ABC_membrane	e7sccAX1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
V [auth AZ]	ABC_membrane	e7sccAZ1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
X [auth BB]	ABC_membrane	e7sccBB1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
Z [auth BE]	ABC_membrane	e7sccBE1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
EA [auth BK]	ABC_membrane	e7sccBK1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
M [auth AO]	ABC_membrane	e7sccAO1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
FA [auth BM]	ABC_membrane	e7sccBM1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
N [auth AQ]	ABC_membrane	e7sccAQ1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
GA [auth BO]	ABC_membrane	e7sccBO1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
HA [auth BP]	ABC_membrane	e7sccBP1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
O [auth AS]	ABC_membrane	e7sccAS1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)
P [auth AT]	ABC_membrane	e7sccAT1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: ABC_membrane	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], G [auth AH], I [auth AJ], K [auth AL], S [auth AW], U [auth AY], W [auth BA], Y [auth BD]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], H [auth AI], J [auth AK], L [auth AM], T [auth AX], V [auth AZ], X [auth BB], Z [auth BE]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
EA [auth BK], M [auth AO]	PF01383	CpcD/allophycocyanin linker domain (CpcD)	CpcD/allophycocyanin linker domain		Domain
FA [auth BM], N [auth AQ]	PF00427	Phycobilisome Linker polypeptide (PBS_linker_poly)	Phycobilisome Linker polypeptide	-	Family
GA [auth BO], HA [auth BP], O [auth AS], P [auth AT]	PF02136	Nuclear transport factor 2 (NTF2) domain (NTF2)	Nuclear transport factor 2 (NTF2) domain	This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], G [auth AH], I [auth AJ], K [auth AL], S [auth AW], U [auth AY], W [auth BA], Y [auth BD]	Allophycocyanin alpha chain	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], H [auth AI], J [auth AK], L [auth AM], T [auth AX], V [auth AZ], X [auth BB], Z [auth BE]	Allophycocyanin beta chain	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
EA [auth BK], M [auth AO]	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
FA [auth BM], N [auth AQ]	Phycobiliprotein ApcE	lyase activity catalytic activity	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
GA [auth BO], HA [auth BP], O [auth AS], P [auth AT]	Orange carotenoid-binding protein	molecular transducer activity photoreceptor activity signaling receptor activity ion binding binding anion binding chloride ion binding small molecule binding	detection of light stimulus response to light stimulus detection of external stimulus response to stimulus response to external stimulus detection of abiotic stimulus detection of stimulus light absorption response to abiotic stimulus response to radiation cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
IA [auth BQ], JA [auth BR], Q [auth AU], R [auth AV]	Phycobilisome rod-core linker polypeptide CpcG	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], G [auth AH], I [auth AJ], K [auth AL], S [auth AW], U [auth AY], W [auth BA], Y [auth BD]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], G [auth AH], I [auth AJ], K [auth AL], S [auth AW], U [auth AY], W [auth BA], Y [auth BD]	IPR009050	Globin-like superfamily	Homologous Superfamily
A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], A [auth AA], AA [auth BF], C [auth AC], CA [auth BH], E [auth AE], G [auth AH], I [auth AJ], K [auth AL], S [auth AW], U [auth AY], W [auth BA], Y [auth BD]	IPR012128	Phycobilisome, alpha/beta subunit	Family
B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], H [auth AI], J [auth AK], L [auth AM], T [auth AX], V [auth AZ], X [auth BB], Z [auth BE]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], H [auth AI], J [auth AK], L [auth AM], T [auth AX], V [auth AZ], X [auth BB], Z [auth BE]	IPR006245	Allophycocyanin, beta subunit	Family
B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], H [auth AI], J [auth AK], L [auth AM], T [auth AX], V [auth AZ], X [auth BB], Z [auth BE]	IPR009050	Globin-like superfamily	Homologous Superfamily
B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], B [auth AB], BA [auth BG], D [auth AD], DA [auth BI], F [auth AF], H [auth AI], J [auth AK], L [auth AM], T [auth AX], V [auth AZ], X [auth BB], Z [auth BE]	IPR012128	Phycobilisome, alpha/beta subunit	Family
EA [auth BK], M [auth AO]	IPR011064	Allophycocyanin linker chain	Homologous Superfamily
EA [auth BK], M [auth AO]	IPR011134	Allophycocyanin linker protein	Family
EA [auth BK], M [auth AO]	IPR008213	CpcD-like domain	Domain
FA [auth BM], N [auth AQ]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
FA [auth BM], N [auth AQ]	IPR001297	Phycobilisome linker domain	Domain
FA [auth BM], N [auth AQ]	IPR009050	Globin-like superfamily	Homologous Superfamily
FA [auth BM], N [auth AQ]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
FA [auth BM], N [auth AQ]	IPR012128	Phycobilisome, alpha/beta subunit	Family
GA [auth BO], HA [auth BP], O [auth AS], P [auth AT]	IPR015233	Orange carotenoid-binding protein, N-terminal	Domain
GA [auth BO], HA [auth BP], O [auth AS], P [auth AT]	IPR032710	NTF2-like domain superfamily	Homologous Superfamily
GA [auth BO], HA [auth BP], O [auth AS], P [auth AT]	IPR002075	Nuclear transport factor 2 domain	Domain
GA [auth BO], HA [auth BP], O [auth AS], P [auth AT]	IPR036917	Orange carotenoid-binding protein, N-terminal domain superfamily	Homologous Superfamily
IA [auth BQ], JA [auth BR], Q [auth AU], R [auth AV]	IPR016470	Phycobilisome linker protein	Family
IA [auth BQ], JA [auth BR], Q [auth AU], R [auth AV]	IPR001297	Phycobilisome linker domain	Domain
IA [auth BQ], JA [auth BR], Q [auth AU], R [auth AV]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily